| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 393589 = | 127 (0.620) | 14 (0.080) | 9/142 | NT | 10.7% | intergenic (+12/+48) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein |
| ? | USA300TCH1516_ALE | 393631 = | 121 (0.670) | intergenic (+54/+6) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein | |||||
ATATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/393687‑393589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTA > USA300TCH1516_ALE/393631‑393718 ATATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCG < 2:3773578/91‑1 TATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGA < 2:2692915/91‑1 TATGCTTGTCATCACTTGCCTTGATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGA < 2:2692852/91‑1 ATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAG < 1:362290/91‑1 TGCATGTCATCTCTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAAATTAGTGAGCCGAGC < 2:177528/91‑1 GCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCG > 1:1241058/1‑91 GCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCG < 1:3622802/91‑1 GCTTGTCATCACGTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCG < 2:3286040/91‑1 CTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGT > 2:3343674/1‑91 TTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTC < 1:661452/91‑1 TGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAGTATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCT < 2:1372799/91‑1 TGTCATCACTTGCCTTCATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCT < 2:3038074/91‑1 GTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAACAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT > 2:2945628/1‑91 GTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT < 1:3529719/91‑1 ACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTACATAGCCAACGAACGACGATAAAGGCAAGTGATGACAAG > 2:1071261/1‑91 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGC > 2:3708093/1‑91 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGC < 1:3708093/91‑1 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAATGACGATAAAGGCAAGTGATGACAAGCA > 2:1682256/1‑91 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCA > 1:2799867/1‑91 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCA > 1:1009111/1‑91 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCA > 1:2289484/1‑91 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCA > 2:305668/1‑91 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCAT > 1:2330389/1‑91 CAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATAT > 2:3593069/1‑91 CAAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATAT > 1:1175625/1‑91 AAACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATT > 2:1287171/1‑91 AACACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTG > 1:3834053/1‑91 CACTTACAAATTTAGTGTGCCGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAG > 2:1936973/1‑91 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC < 2:830615/91‑1 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC < 2:962198/91‑1 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC < 1:371910/91‑1 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC > 1:2794609/1‑91 GAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGC < 1:2325728/91‑1 GCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGG < 2:1078250/91‑1 GCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGG < 2:1078064/91‑1 GCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGG < 1:535685/91‑1 GCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGG > 1:2418219/1‑91 CGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGGCAAGCATATTGAGGTAATAATGATTGTCATAAGCGGT < 2:3765091/91‑1 GTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTT > 1:2500271/1‑91 GTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTT < 2:3733000/91‑1 TCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTT > 2:1800664/1‑91 CTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTA > 1:1775515/1‑91 ATATGCTTGTCATCACTTGCCTTTATCGTCGTTCATTGGCTATATAGTTAATATGAAAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/393687‑393589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTA > USA300TCH1516_ALE/393631‑393718 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |