| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 393589 = | 127 (0.620) | 14 (0.080) | 9/142 | NT | 10.7% | intergenic (+12/+48) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein |
| ? | USA300TCH1516_ALE | 393631 = | 121 (0.670) | intergenic (+54/+6) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein | |||||
Only 100 of 193 total aligned reads displayed.
AGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTA > USA300TCH1516_ALE/393541‑393718 | aGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCttt > 1:3763696/1‑91 (MQ=255)aGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCttt > 2:2047024/1‑91 (MQ=255)aGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCttt < 1:2997066/91‑1 (MQ=255) gtgtTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCtttt < 1:1000033/91‑1 (MQ=255) gtgtTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCtttt < 1:509871/91‑1 (MQ=255) gtgtTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCtttt < 1:2581006/91‑1 (MQ=255) gtTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCa < 1:838153/91‑1 (MQ=255) gtTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCa > 1:175833/1‑91 (MQ=255) tGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCatat < 2:1853703/91‑1 (MQ=255) tGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTAGTAAGTGTTTGAGCGGCTTTTCatat > 1:1223585/1‑91 (MQ=255) gaagaagaaAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATAtt < 2:384348/91‑1 (MQ=255) aagaagaaAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTa > 1:2647568/1‑91 (MQ=255) aagaagaaAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTa < 1:3231575/91‑1 (MQ=255) aagaagaaAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTa > 2:692435/1‑91 (MQ=255) gaagaaAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAAc > 1:3614883/1‑91 (MQ=255) gaagaaAACAACCAATACGACTTGTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTCGTAAGTGTTTGAGCGTCTTTTCacatcacc > 2:1497660/1‑87 (MQ=255) gaaAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACtat > 1:1103031/1‑91 (MQ=255) aaaaCAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACtata < 2:3071780/91‑1 (MQ=255) aaaCAACCAATACGACTTTTAAAGTATAAAAATAAGACGTTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACtatat > 1:3440798/1‑91 (MQ=255) aaaCAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACtatat < 1:2986045/91‑1 (MQ=255) acaacCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAg > 2:2591805/1‑91 (MQ=255) caacCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGc < 2:2390890/91‑1 (MQ=255) caacCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGc > 1:2866549/1‑91 (MQ=255) caacCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGCGTTTGAGCGTCTTTTCATATTAACTATATAGc > 1:3364650/1‑91 (MQ=255) aacCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGcc < 1:1855805/91‑1 (MQ=255) aacCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGcc < 1:2336206/91‑1 (MQ=255) acCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCa < 2:2733338/91‑1 (MQ=255) acCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCa > 1:3623798/1‑91 (MQ=255) acCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCa > 2:3260677/1‑91 (MQ=255) acCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCa < 1:2238406/91‑1 (MQ=255) acCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATAAACTATATAGCCa < 2:1330893/91‑1 (MQ=255) acCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGAGTTTGAGCGTCTTTTCATATTAACTATATAGCCa > 2:3658057/1‑91 (MQ=255) aaTACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATg < 2:812588/91‑1 (MQ=255) tACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGaa > 1:193914/1‑91 (MQ=255) tACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTAATCATATTAAATATATAGCCAATGaa > 2:3419725/1‑91 (MQ=255) aCGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAac < 2:3258661/91‑1 (MQ=255) cGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAacg < 2:1708234/91‑1 (MQ=255) gACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAacga < 1:3557957/91‑1 (MQ=255) aCTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAacgac < 1:1500637/91‑1 (MQ=255) cTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAacgacg > 2:1012705/1‑91 (MQ=255) ttAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTAATATTAACTATATAGCCAATGAACGACGATa > 1:722296/1‑91 (MQ=255) aaGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAg > 1:1039005/1‑91 (MQ=255) aGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAgg > 1:1716444/1‑91 (MQ=255) aGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAgg > 1:429940/1‑91 (MQ=255) tataAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCa < 2:2020630/91‑1 (MQ=255) ataAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCaa > 1:136678/1‑91 (MQ=255) ataAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCaa > 2:1104018/1‑91 (MQ=255) taAAAATAAGACGCTCGGCACACTAAATTTGTACGTGCTTGAGCGTGTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAg > 1:3163036/1‑91 (MQ=255) taAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAg < 1:928263/91‑1 (MQ=255) aaaaaTAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGt > 1:2869924/1‑91 (MQ=255) aaaaTAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGtg < 1:1901771/91‑1 (MQ=255) aaaTAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGtga < 1:2759458/91‑1 (MQ=255) aTAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGtgatg > 2:252442/1‑91 (MQ=255) tAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGtgatga < 2:3791729/91‑1 (MQ=255) AAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGAc < 1:3529719‑M1/91‑1 (MQ=255) AAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTGTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGAc > 2:2945628‑M1/1‑91 (MQ=255) AGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATACTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACa < 2:1372799‑M1/91‑1 (MQ=255) GACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACaa < 1:661452‑M1/91‑1 (MQ=255) acgctcaaacacttacaaatttagtgtgccgagcgtcttTTCATATTAACTACATAGCCAACGAACGACGATAAAGGCAAGTGATGACAAg > 2:1071261‑M2/40‑91 (MQ=255) ACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAg > 2:3343674‑M1/1‑91 (MQ=255) CGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCACGTGATGACAAGc < 2:3286040‑M1/91‑1 (MQ=255) gctcaaacacttacaaatttagtgtgccgagcgtcttTTCATATTAACTATATAGCCAATGAATGACGATAAAGGCAAGTGATGACAAGCa > 2:1682256‑M2/38‑91 (MQ=255) gctcaaacacttacaaatttagtgtgccgagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCa > 2:305668‑M2/38‑91 (MQ=255) gctcaaacacttacaaatttagtgtgccgagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCa > 1:1009111‑M2/38‑91 (MQ=255) gctcaaacacttacaaatttagtgtgccgagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCa > 1:2799867‑M2/38‑91 (MQ=255) CTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCat < 1:362290‑M1/91‑1 (MQ=255) TCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATCAAGGCAAGTGATGACAAGCata < 2:2692852‑M1/91‑1 (MQ=255) caaacacttacaaatttagtgtgccgagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCatat > 2:3593069‑M2/35‑91 (MQ=255) CGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCatat < 2:3773578‑M1/91‑1 (MQ=255) aaacacttacaaatttagtgtgccgagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATAtt > 2:1287171‑M2/34‑91 (MQ=255) gCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTg < 2:2901538/91‑1 (MQ=255) cacttacaaatttagtgtgccgagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAg > 2:1936973‑M2/31‑91 (MQ=255) acacTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAg < 2:303461/91‑1 (MQ=255) cacTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAgg > 1:1075349/1‑91 (MQ=255) tAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGtaa > 2:1246613/1‑91 (MQ=255) aaTTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGtaata < 1:2422719/91‑1 (MQ=255) ttGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATg < 1:2047024/91‑1 (MQ=255) tAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGAtt > 2:1546278/1‑91 (MQ=255) tAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGAtt < 2:1491777/91‑1 (MQ=255) aaGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTg > 1:3273316/1‑91 (MQ=255) aaGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTg > 2:2015324/1‑91 (MQ=255) aaGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTg > 1:967240/1‑91 (MQ=255) aaGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGAGAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTg > 2:3472341/1‑91 (MQ=255) aGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGt < 2:3875340/91‑1 (MQ=255) tgtTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCa < 2:2254708/91‑1 (MQ=255) gtTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCAt < 2:1673850/91‑1 (MQ=255) tttGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATa > 1:2807498/1‑91 (MQ=255) ttGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATaa < 1:3847201/91‑1 (MQ=255) ttGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATaa < 1:2126457/91‑1 (MQ=255) ttGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATaa < 1:2128164/91‑1 (MQ=255) tGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAg > 1:2624105/1‑91 (MQ=255) gagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGc < 1:2325728‑M2/82‑1 (MQ=255) gagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGc < 1:371910‑M2/82‑1 (MQ=255) gagcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGc < 2:830615‑M2/82‑1 (MQ=255) gcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCgg > 1:2418219‑M2/8‑91 (MQ=255) gcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCgg < 2:1078250‑M2/84‑1 (MQ=255) gcgtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCgg < 1:535685‑M2/84‑1 (MQ=255) gtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGtt < 2:3733000‑M2/86‑1 (MQ=255) gtcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGtt > 1:2500271‑M2/6‑91 (MQ=255) tcttTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGttt > 2:1800664‑M2/5‑91 (MQ=255) | AGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGACAAGCATATTGAGGTAATAATGATTGTCATAAGCGGTTTA > USA300TCH1516_ALE/393541‑393718 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |