| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 393589 = | 127 (0.620) | 14 (0.080) | 9/142 | NT | 10.7% | intergenic (+12/+48) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein |
| ? | USA300TCH1516_ALE | 393631 = | 121 (0.670) | intergenic (+54/+6) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein | |||||
Only 100 of 236 total aligned reads displayed.
GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGAC > USA300TCH1516_ALE/393499‑393679 | gTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACACGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAACATA > 2:2877099‑M1/1‑91 (MQ=255)gTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATA > 2:3729506‑M1/1‑91 (MQ=255)gTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATA < 1:2231885‑M1/91‑1 (MQ=255) taaaccgcttatgacaatcattattacctcaatatgcttgtcatcacttgcctttatcgtcgttcattggctatatagttaatatgaaAAg > 1:1775515‑M1/89‑91 (MQ=255) tGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAG < 1:1869082‑M1/91‑1 (MQ=255) gCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGAC > 1:1085512‑M1/1‑91 (MQ=255) aaccgcttatgacaatcattattacctcaatatgcttgtcatcacttgcctttatcgtcgttcattggctatatagttaatatgaaAAGAc > 1:2500271‑M1/87‑91 (MQ=255) cacaATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACG > 1:2124678‑M1/1‑91 (MQ=255) ccgcttatgacaatcattattacctcaatatgcttgtcatcacttgcctttatcgtcgttcattggctatatagttaatatgaaAAGACGc < 2:1078064‑M1/7‑1 (MQ=255) ccgcttatgacaatcattattacctcaatatgcttgtcatcacttgcctttatcgtcgttcattggctatatagttaatatgaaAAGACGc < 1:535685‑M1/7‑1 (MQ=255) caATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCT > 1:10285‑M1/1‑91 (MQ=255) caATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCT > 1:1213330‑M1/1‑91 (MQ=255) caATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCT > 1:3091506‑M1/1‑91 (MQ=255) gcttatgacaatcattattacctcaatatgcttgtcatcacttgcctttatcgtcgttcattggctatatagttaatatgaaAAGACGCTc < 2:830615‑M1/9‑1 (MQ=255) gcttatgacaatcattattacctcaatatgcttgtcatcacttgcctttatcgtcgttcattggctatatagttaatatgaaAAGACGCTc < 1:371910‑M1/9‑1 (MQ=255) gcttatgacaatcattattacctcaatatgcttgtcatcacttgcctttatcgtcgttcattggctatatagttaatatgaaAAGACGCTc > 1:2794609‑M1/83‑91 (MQ=255) tCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCgg > 1:202960/1‑91 (MQ=255) tCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCgg > 1:293802/1‑91 (MQ=255) ccACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGc < 1:2090946/91‑1 (MQ=255) acaATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGcac < 2:1488009/91‑1 (MQ=255) aaTGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCacac < 1:2579958/91‑1 (MQ=255) aaTGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCacac > 1:286504/1‑91 (MQ=255) aaTGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCacac > 2:381151/1‑91 (MQ=255) aTGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACt < 1:1639717/91‑1 (MQ=255) cGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTaaa > 2:2446063/1‑91 (MQ=255) aaCTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACATCCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAAtt < 2:3481243/91‑1 (MQ=255) aaCTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAAtt < 2:1708608/91‑1 (MQ=255) aaCTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAAtt > 1:335005/1‑91 (MQ=255) cTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTg < 1:1517331/91‑1 (MQ=255) cAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTCTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAg > 1:3948456/1‑91 (MQ=255) aaGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAgtg < 1:2728582/91‑1 (MQ=255) caatatgcttgtcatcacttgcctttatcgtcgttcattggctatatagttaatatgaaAAGACGCTCGGCACACTAAATTTGTAAGTGtt > 1:3834053‑M1/60‑91 (MQ=255) tACAACAACAAGTGTTTGAAGAAGAAAACAACTAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTGAATTTGTAAGTGttt < 1:3374598/91‑1 (MQ=255) tACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCaaacacttacaaatttagtgtgcc < 1:3470028‑M1/91‑25 (MQ=255) tACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGttt > 1:934943/1‑91 (MQ=255) atatgcttgtcatcacttgcctttatcgtcgttcattggctatatagttaatatgaaAAGACGCTCGGCACACTAAATTTGTAAGTGTTTg > 2:3593069‑M1/58‑91 (MQ=255) acaacaacaAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTg > 2:1495488‑M2/1‑90 (MQ=255) acaacaacaAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTg > 2:3957480‑M2/1‑90 (MQ=255) acaacaacaAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTg > 2:1291365‑M2/1‑90 (MQ=255) caacaacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCaaacacttacaaatttagtgtgccga < 1:1853942‑M1/91‑27 (MQ=255) caacaacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCaaacacttacaaatttagtgtgccga < 2:3696795‑M1/91‑27 (MQ=255) caacaacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTga < 1:577153‑M2/91‑3 (MQ=255) caacaacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTga < 1:1478048‑M2/91‑3 (MQ=255) atgcttgtcatcacttgcctttatcgtcgttcattggctatatagttaatatgaaAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAg > 1:2330389‑M1/56‑91 (MQ=255) aacaacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTgag < 1:3262611‑M2/91‑4 (MQ=255) tgcttgtcatcacttgcctttatcgtcgttcattggctatatagttaatatgaaAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGc > 1:2289484‑M1/55‑91 (MQ=255) tgcttgtcatcacttgcctttatcgtcattcattggctatatagttaatatgaaAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGc > 2:1682256‑M1/55‑91 (MQ=255) acaacaaGTGTTTGAAGAAGAAAACAACCATTACGTCTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTgagc > 2:605886‑M2/1‑87 (MQ=255) acaacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTgagc > 2:2885962‑M2/1‑87 (MQ=255) caacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTgagcg < 1:1723036‑M2/91‑6 (MQ=255) caacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTgagcg > 2:1880704‑M2/1‑86 (MQ=255) caacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTgagcg < 1:204369‑M2/91‑6 (MQ=255) caacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTgagcg > 2:530000‑M2/1‑86 (MQ=255) caacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTAAAAAAATAAGACGCTCaaacacttacaaatttagtgtgccgagcg < 2:2569997‑M1/91‑30 (MQ=255) aacaaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCaaacacttacaaatttagtgtgccgagcgt < 1:634499‑M1/91‑31 (MQ=255) caaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTgagcgtct > 2:3750595‑M2/1‑83 (MQ=255) aaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCaaacacttacaaatttagtgtgccgagcgtctt < 2:3651146‑M1/91‑34 (MQ=255) aaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTgagcgtctt < 2:2286139‑M2/91‑10 (MQ=255) aaGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTgagcgtctt < 2:2104076‑M2/91‑10 (MQ=255) aGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCttt < 1:2822835/91‑1 (MQ=255) aGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCttt > 1:3763696/1‑91 (MQ=255) gtgtTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCtttt < 2:3854690/91‑1 (MQ=255) gtgtTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCtttt < 1:1000033/91‑1 (MQ=255) gtgtTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCtttt < 1:509871/91‑1 (MQ=255) gtTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCa < 2:3089048/91‑1 (MQ=255) gaagaagaaAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATAtt < 2:384183/91‑1 (MQ=255) aagaagaaAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTa < 1:3231575/91‑1 (MQ=255) gaagaaAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAAc > 1:3614302/1‑91 (MQ=255) aagaaAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACt < 2:34232/91‑1 (MQ=255) aaaCAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACtatat < 1:2986075/91‑1 (MQ=255) aacaacCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACtatata < 2:1510390/91‑1 (MQ=255) acaacCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAg > 2:2591805/1‑91 (MQ=255) caacCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGc < 2:2390890/91‑1 (MQ=255) aacCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGcc < 1:2336206/91‑1 (MQ=255) aacCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGcc < 1:1855805/91‑1 (MQ=255) acCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCa > 2:1827650/1‑91 (MQ=255) acCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCa < 2:2733338/91‑1 (MQ=255) acCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCa > 1:3623798/1‑91 (MQ=255) acCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATAAACTATATAGCCa < 2:1331411/91‑1 (MQ=255) aaTACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATg < 2:812588/91‑1 (MQ=255) tACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGaa > 1:193914/1‑91 (MQ=255) aCGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAac < 2:3258661/91‑1 (MQ=255) aCTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAacgac < 2:2955688/91‑1 (MQ=255) aCTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAacgac < 2:3057745/91‑1 (MQ=255) cTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAacgacg > 2:1012705/1‑91 (MQ=255) ttAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTAATATTAACTATATAGCCAATGAACGACGATa > 1:722296/1‑91 (MQ=255) tAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATaa > 1:909401/1‑91 (MQ=255) aGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAgg > 2:3377880/1‑91 (MQ=255) tataAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCa < 2:2020630/91‑1 (MQ=255) tataAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCa < 2:163791/91‑1 (MQ=255) ataAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCaa > 1:136678/1‑91 (MQ=255) ataAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCaa > 2:1104018/1‑91 (MQ=255) taAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAg < 1:3261527/91‑1 (MQ=255) aaaaaTAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGt > 1:2869924/1‑91 (MQ=255) aaaTAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGtga < 1:2624387/91‑1 (MQ=255) aTAAGACGCTCGGCACACTAAATTTGTAAGTGTTTgagcgtcttatttttatactttaaaagtcgtattggttgttttcttcttcaaacac < 2:1914787‑M2/91‑57 (MQ=255) aTAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGtgatg > 2:252442/1‑91 (MQ=255) aTAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGtgatg < 1:1908958/91‑1 (MQ=255) aaGACGCTCaaacacttacaaatttagtgtgccgagcgtcttatttttatactttaaaagtcgtattggttgttttcttctacaaacactt > 1:3787607‑M1/1‑9 (MQ=255) AAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGAc < 1:3529719‑M1/91‑1 (MQ=255) | GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCGGCACACTAAATTTGTAAGTGTTTGAGCGTCTTTTCATATTAACTATATAGCCAATGAACGACGATAAAGGCAAGTGATGAC > USA300TCH1516_ALE/393499‑393679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |