| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 393597 | 127 (0.620) | 11 (0.060) | 7/142 | NT | 8.6% | intergenic (+20/+40) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 393621 | 121 (0.670) | intergenic (+44/+16) | USA300HOU_RS01800/USA300HOU_RS01805 | NAD(P)H‑dependent FAD/FMN reductase/hypothetical protein | |||||
GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/393499‑393597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacgctcAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTGT < USA300TCH1516_ALE/393621‑393532 GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACACGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAACATA > 2:2877099/1‑91GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATA > 2:3729506/1‑91GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATA > 1:3747540/1‑91GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATA < 1:2511713/91‑1GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATA < 1:2231885/91‑1 TTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAA < 2:1678018/91‑1 TGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAG < 1:1867510/91‑1 TGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAG < 1:1869082/91‑1 GCACAATCCACAATGCGAACTGCCAAAGTACAACANCAAGTGTTTGAAGCAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGAC > 1:2198567/1‑91 GCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGAC > 1:1085512/1‑91 CACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACG > 1:58782/1‑91 CACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACG < 2:1388996/91‑1 CACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACG > 1:2124678/1‑91 CAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCT > 2:2836380/1‑91 CAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCT > 1:10285/1‑91 CAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCT < 2:60536/91‑1 CAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCT > 1:3091506/1‑91 CAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCT > 1:1213330/1‑91 AATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTC > 2:3549263/1‑91 TACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCC < 1:3470028/91‑1 ACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCG < 1:2476192/91‑1 CAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGA < 1:2119753/91‑1 CAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGA < 1:1853942/91‑1 CAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGA < 2:3696795/91‑1 CAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGA < 1:1853987/91‑1 CAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCG < 2:2409802/91‑1 CAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTAAAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCG < 2:2569997/91‑1 AACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGT < 1:634499/91‑1 AAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTT < 2:3651146/91‑1 GTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTAT < 2:1914787/91‑1 AAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTT < 2:2286139/91‑1 AAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTT < 2:2104076/91‑1 AAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTT > 1:3786729/1‑91 AAGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTACAAACACTT > 1:3787607/1‑91 AGACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTG > 2:3750595/1‑91 ACGCTCATACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCATACACTTGTT < 1:1977287/91‑1 ACGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTT > 1:3182887/1‑91 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTG < 2:3452212/91‑1 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTG < 1:204369/91‑1 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTG < 2:2556939/91‑1 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTG > 2:530000/1‑91 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTG > 2:1880704/1‑91 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTG < 1:1723036/91‑1 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTG < 2:2402887/91‑1 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTG > 1:1853218/1‑91 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTG > 1:285263/1‑91 CGCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTG > 1:3496018/1‑91 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGT > 2:2885962/1‑91 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGT < 2:3220597/91‑1 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGT < 2:3930300/91‑1 GCTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGACGTAATGGTTGTTTTCTTCTTCAAACACTTGTTGT > 2:605886/1‑91 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTT < 2:2562692/91‑1 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTT < 1:3262611/91‑1 CTCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTT < 1:3262493/91‑1 TCAAACCCTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG < 1:3292897/91‑1 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG > 2:911897/1‑91 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG < 1:577153/91‑1 TCAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTG < 1:1478048/91‑1 CAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTTGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTGT > 1:1931826/1‑91 CAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTGT > 2:3957480/1‑91 CAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTGT > 2:1291365/1‑91 CAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTGT > 2:1495488/1‑91 GTTGGCACAATCCACAATGCGAACTGCCAAAGTACAACAACAAGTGTTTGAAGAAGAAAACAACCAATACGACTTTTAAAGTATAAAAATAAGACGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/393499‑393597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagacgctcAAACACTTACAAATTTAGTGTGCCGAGCGTCTTATTTTTATACTTTAAAAGTCGTATTGGTTGTTTTCTTCTTCAAACACTTGTTGTTGT < USA300TCH1516_ALE/393621‑393532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |