| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 412131 = | 178 (0.870) | 9 (0.050) | 6/144 | NT | 5.7% | coding (1028/1161 nt) | metC | Cystathionine beta‑lyase MetC |
| ? | USA300TCH1516_ALE | 412165 = | 140 (0.760) | coding (994/1161 nt) | metC | Cystathionine beta‑lyase MetC | |||||
CATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/412227‑412131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTT > USA300TCH1516_ALE/412165‑412254 CATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGT < 2:2900749/91‑1 ATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTG < 1:1694010/91‑1 TTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGA < 2:2443024/91‑1 ACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGA > 2:839275/1‑91 ACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGA < 1:1532444/91‑1 ACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGA > 1:3043557/1‑91 CCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGAC < 2:2370819/91‑1 CACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGACA < 2:793677/91‑1 CACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGACA < 1:3065360/91‑1 CACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGACA < 1:3062923/91‑1 CACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGACA < 1:3062712/91‑1 CACTCGTTTCAGTGAGTCTGGGCGGAGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGACA < 1:3688850/91‑1 GTCTCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGG > 2:1805839/1‑91 TCTCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGT > 1:1787866/1‑91 TCTCACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGT > 1:1787942/1‑91 CACGCTGCACTACCTGAAGACGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGAATCACTGAAACGAGTGGTAAT > 2:2384697/1‑91 CACGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGCAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAAT > 1:1339086/1‑91 CGCTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGT > 1:551817/1‑91 CTGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCA > 1:914423/1‑91 CTGCACTACCTGAAGAAGTGAGACATTGTTGCCGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCc > 2:2057206/1‑90 TGCACTACCTGAAGAAGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAG > 2:2404186/1‑91 GTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGT > 1:1230040/1‑91 TGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTT < 2:1778242/91‑1 GAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAGCACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTG < 1:2084569/91‑1 GAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTG < 1:1511509/91‑1 GAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTG < 2:3582690/91‑1 GAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTG > 1:221256/1‑91 GAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTG > 1:221255/1‑91 GAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTG > 1:220652/1‑91 GAGACATTGTTGCTGGAGGTGAAAGTATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTG < 2:1496839/91‑1 AGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCATACTCACTGAAACGAGTGGTAATATCAGTGCATCGACAAATTGTTGT < 1:3133203/91‑1 AGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGT < 1:3044971/91‑1 AGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGT > 2:3832654/1‑91 AGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGT < 1:540828/91‑1 AGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGT < 1:540567/91‑1 AGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACCGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGT > 1:31355/1‑91 GACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTG > 1:3576353/1‑91 ACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGC > 1:515748/1‑91 ACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGC > 1:515725/1‑91 ACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGC < 1:3314407/91‑1 ATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTT > 2:1777892/1‑91 ATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTT > 2:1777664/1‑91 ATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTT > 1:2449669/1‑91 CATTACCACTCGTTTCAGTGAGTCTGGGCGGTGTTGAAACGATCCTTTCACATCCAGCAACAATGTCTCACGCTGCACTACCTGAAGAAGTGAGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/412227‑412131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTT > USA300TCH1516_ALE/412165‑412254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |