BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	412131 =	178 (0.870)	9 (0.050)	6/144	NT	5.7%	coding (1028/1161 nt)	metC	Cystathionine beta‑lyase MetC
*	?	USA300TCH1516_ALE	412165 =	140 (0.760)	9 (0.050)	6/144	NT	5.7%	coding (994/1161 nt)	metC	Cystathionine beta‑lyase MetC

Only 100 of 236 total aligned reads displayed.

TTTAATGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTG  >  USA300TCH1516_ALE/412041‑412221

tttAATGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCtt                                                                                            >  2:3324435/1‑91 (MQ=255)

tttAATGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCtt                                                                                            >  1:946007/1‑91 (MQ=255)

tttAATGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCtt                                                                                            >  1:2777843/1‑91 (MQ=255)

aagcacaacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaat                                                                                            >  2:1777892‑M1/91‑91 (MQ=255)

aagcacaacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaat                                                                                            >  1:2449669‑M1/91‑91 (MQ=255)

  gcacaacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGt                                                                                          >  1:515748‑M1/89‑91 (MQ=255)

  gcacaacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGt                                                                                          <  1:3314407‑M1/3‑1 (MQ=255)

   cacaacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGtc                                                                                         >  1:3576353‑M1/88‑91 (MQ=255)

   aaTGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGtc                                                                                         >  1:3825770/1‑91 (MQ=255)

    acaacaatttgtcgatgcactgatattaccactcgtttcagtgagtatgggcggtgttgaaacgatcctttcacatccagcaacaaTGtct                                                                                        <  1:3133203‑M1/5‑1 (MQ=255)

    aTGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGtct                                                                                        >  2:1959824/1‑91 (MQ=255)

     tGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGtctc                                                                                       <  1:678544/91‑1 (MQ=255)

     tGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGtctc                                                                                       <  2:2996113/91‑1 (MQ=255)

     caacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGtctc                                                                                       >  1:221256‑M1/86‑91 (MQ=255)

     caacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGtctc                                                                                       >  1:220652‑M1/86‑91 (MQ=255)

     caacaatttgtcgatgcactgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatactttcacctccagcaacaaTGtctc                                                                                       <  2:1496839‑M1/6‑1 (MQ=255)

      gCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCa                                                                                      <  2:1029037/91‑1 (MQ=255)

      gCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCa                                                                                      <  2:1675924/91‑1 (MQ=255)

      gCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCa                                                                                      >  2:897066/1‑91 (MQ=255)

      gCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCa                                                                                      >  2:83926/1‑91 (MQ=255)

         tATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCActt                                                                                   <  2:3734801/91‑1 (MQ=255)

         tATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCActt                                                                                   <  1:1209846/91‑1 (MQ=255)

          aTTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCActtc                                                                                  <  2:1984833/91‑1 (MQ=255)

            ttGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCActtctt                                                                                <  2:1935268/91‑1 (MQ=255)

            ttGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCActtctt                                                                                >  2:527073/1‑91 (MQ=255)

               aTGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAg                                                                             >  2:3906748/1‑91 (MQ=255)

                tGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAgg                                                                            <  1:952397/91‑1 (MQ=255)

                  tCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTa                                                                          <  1:235130/91‑1 (MQ=255)

                  tCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTa                                                                          >  1:3829116/1‑91 (MQ=255)

                   ttGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTATTCAGGTAg                                                                         >  1:671380/2‑91 (MQ=255)

                       ctgacattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACTTCTTCAGGTAGTGCa                                                                     >  2:2404186‑M1/68‑91 (MQ=255)

                         tGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGATCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGc                                                                   <  2:3768536/91‑1 (MQ=255)

                          acattaccactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACTTCTTCAGGTAGTGCAGCg                                                                  >  1:551817‑M1/65‑91 (MQ=255)

                            attaccactcgtttcagtgattctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACGTCTTCAGGTAGTGCAGCGTg                                                                >  2:2384697‑M1/63‑91 (MQ=255)

                            attaccactcgtttcagtgagtctgggcggtgttgaaacgatccttgcacatccagcaacaaTGTCTCACTTCTTCAGGTAGTGCAGCGTg                                                                >  1:1339086‑M1/63‑91 (MQ=255)

                             ttCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTga                                                               >  1:1294827/1‑91 (MQ=255)

                               catcaGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTgaga                                                             >  1:3026406/1‑91 (MQ=255)

                               catcaGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTgaga                                                             >  2:2791634/1‑91 (MQ=255)

                               catcaGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTgaga                                                             >  2:463473/1‑91 (MQ=255)

                               accactcgtttcagtgagtctgggcggtgttgaaacgatcctttcacatccagcaacaaTGTCTCACTTCTTCAGGTAGTGCAGCGTgaga                                                             >  1:1787866‑M1/60‑91 (MQ=255)

                                atcaGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGAc                                                            >  1:2485989/1‑91 (MQ=255)

                                 tcaGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACa                                                           >  2:35586/1‑91 (MQ=255)

                                  caGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAt                                                          >  2:1251489/1‑91 (MQ=255)

                                    ggATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttg                                                        <  1:2372994/91‑1 (MQ=255)

                                     gATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgt                                                       >  2:333116/1‑91 (MQ=255)

                                      aTCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgtt                                                      <  1:1341434/91‑1 (MQ=255)

                                       tCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgttg                                                     <  1:2392727/91‑1 (MQ=255)

                                        cTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGc                                                    >  2:3647038/1‑91 (MQ=255)

                                         ttCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCt                                                   <  1:3229799/91‑1 (MQ=255)

                                         ttCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCt                                                   >  2:1333451/1‑91 (MQ=255)

                                          tCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTg                                                  <  2:2515535/91‑1 (MQ=255)

                                          tCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTg                                                  >  1:3053486/1‑91 (MQ=255)

                                           caagaCCATCAATTAATCAGAATAGGCCCAAACTTATACATCGTTCTTGTCCCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGATgg                                                 <  2:771345/89‑1 (MQ=255)

                                           cGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTgg                                                 >  1:895254/1‑91 (MQ=255)

                                              gaCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAtg                                              >  1:1452310/1‑91 (MQ=255)

                                                ccAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAtgtg                                            <  1:2864648/91‑1 (MQ=255)

                                                  aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                          <  2:2335245/91‑1 (MQ=255)

                                                  aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                          <  1:51296/91‑1 (MQ=255)

                                                  aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTGGCTGGATGTGaa                                          >  2:3296639/1‑91 (MQ=255)

                                                   acacTTAATCGGAATAGACCGAAAGTGATACCGCGTTCTTGTCTCACGTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                         <  2:1104280/91‑1 (MQ=255)

                                                   acacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                         >  2:1620000/1‑91 (MQ=255)

                                                    cacTTAATCTGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAg                                        <  1:3778193/91‑1 (MQ=255)

                                                    cacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAg                                        >  2:2628728/1‑91 (MQ=255)

                                                    cacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAg                                        <  2:961790/91‑1 (MQ=255)

                                                      cTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACCTTGTTGCTGGATGTGAAAGGa                                      >  2:707481/1‑91 (MQ=255)

                                                      cTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGa                                      <  1:1986860/91‑1 (MQ=255)

                                                        tAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACGTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATc                                    <  2:805330/91‑1 (MQ=255)

                                                        tAATCGGAATAGACCGAAAGTGATACCACGTTCTTGGCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATc                                    <  2:3568777/91‑1 (MQ=255)

                                                         aaTCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCg                                   <  1:1602051/91‑1 (MQ=255)

                                                          aTCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGt                                  >  1:2110952/1‑91 (MQ=255)

                                                          aTCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGt                                  >  2:3391526/1‑91 (MQ=255)

                                                            cGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGttt                                >  1:1018628/1‑91 (MQ=255)

                                                            cGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGttt                                >  2:386598/1‑91 (MQ=255)

                                                             ggAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTc                               <  1:3645935/91‑1 (MQ=255)

                                                              gAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCa                              <  2:1801925/91‑1 (MQ=255)

                                                               actAGACCGAAAGTGTTACCACGTTCTTGTCTCTCTGCTGCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCaa                             <  2:2213860/89‑1 (MQ=255)

                                                                aTAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAac                            >  2:1666909/1‑91 (MQ=255)

                                                                 tAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAaca                           <  1:2985921/91‑1 (MQ=255)

                                                                  aGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAacac                          <  1:1824986/91‑1 (MQ=255)

                                                                      cGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGcc                      <  1:2988375/91‑1 (MQ=255)

                                                                      cGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGcc                      <  1:1611384/91‑1 (MQ=255)

                                                                      cGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGcc                      >  1:1429287/1‑91 (MQ=255)

                                                                           gTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGAc                 <  1:3212441/91‑1 (MQ=255)

                                                                            tGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCACCCAGACt                >  1:3476662/1‑91 (MQ=255)

                                                                             gATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTc               <  1:2756599/91‑1 (MQ=255)

                                                                             gATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTc               >  1:2505799/1‑91 (MQ=255)

                                                                               tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc             >  1:1798700/1‑91 (MQ=255)

                                                                               tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc             <  2:1785243/91‑1 (MQ=255)

                                                                               tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc             <  2:2060623/91‑1 (MQ=255)

                                                                               tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTCTCAACACCGCCCAGACTCAc             >  2:154929/1‑91 (MQ=255)

                                                                                aCCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACt            <  1:2062102/91‑1 (MQ=255)

                                                                                   aCGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaa         >  1:1545843/1‑91 (MQ=255)

                                                                                    cGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaaa        <  1:3038911/91‑1 (MQ=255)

                                                                                    cGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaaa        >  2:2116166/1‑91 (MQ=255)

                                                                                      ttCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACg      <  2:2956986/91‑1 (MQ=255)

                                                                                        cTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAg    <  1:2522565/91‑1 (MQ=255)

                                                                                        cTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAg    >  1:1038851/1‑91 (MQ=255)

                                                                                         ttGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGt   >  1:419900/1‑91 (MQ=255)

                                                                                         ttGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGt   >  1:636325/1‑91 (MQ=255)

                                                                                          TGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTg  <  1:3065360‑M1/91‑1 (MQ=255)

TTTAATGCGTATTTGATGTCTGCAATGAGTTCATCAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTG  >  USA300TCH1516_ALE/412041‑412221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.