BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	412131 =	178 (0.870)	9 (0.050)	6/144	NT	5.7%	coding (1028/1161 nt)	metC	Cystathionine beta‑lyase MetC
*	?	USA300TCH1516_ALE	412165 =	140 (0.760)	9 (0.050)	6/144	NT	5.7%	coding (994/1161 nt)	metC	Cystathionine beta‑lyase MetC

Only 100 of 203 total aligned reads displayed.

CAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTTT  >  USA300TCH1516_ALE/412075‑412255

   gATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgt                                                                                         >  2:633768/1‑91 (MQ=255)

   gATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgt                                                                                         >  2:333116/1‑91 (MQ=255)

    aTCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgtt                                                                                        <  1:1860613/91‑1 (MQ=255)

     tCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACAttgttg                                                                                       <  1:2392727/91‑1 (MQ=255)

      cTTCGAGACCAGCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGc                                                                                      <  1:2506516/91‑1 (MQ=255)

       ttCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCt                                                                                     >  2:1333451/1‑91 (MQ=255)

       ttCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCt                                                                                     >  2:1032182/1‑91 (MQ=255)

       ttCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCt                                                                                     <  1:3229799/91‑1 (MQ=255)

       ttCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCt                                                                                     >  1:1693966/1‑91 (MQ=255)

        tCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTg                                                                                    <  2:2515535/91‑1 (MQ=255)

        tCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTg                                                                                    >  2:2902584/1‑91 (MQ=255)

         caagaCCATCAATTAATCAGAATAGGCCCAAACTTATACATCGTTCTTGTCCCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGATgg                                                                                   <  2:771345/89‑1 (MQ=255)

         cGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTgg                                                                                   >  1:895254/1‑91 (MQ=255)

             aCCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAtgt                                                                               <  1:1025348/91‑1 (MQ=255)

              ccAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGAtgtg                                                                              <  1:2864648/91‑1 (MQ=255)

                aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                                                            <  2:356862/91‑1 (MQ=255)

                aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                                                            <  2:2335245/91‑1 (MQ=255)

                aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                                                            <  1:3216215/91‑1 (MQ=255)

                aaCACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaa                                                                            <  1:51296/91‑1 (MQ=255)

                 acacTTCATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                                                           >  2:1470160/1‑91 (MQ=255)

                 acacTTAATCGGAATAGACCGAAAGTGATACCGCGTTCTTGTCTCACGTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                                                           <  2:1104280/91‑1 (MQ=255)

                 acacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                                                           >  2:1620000/1‑91 (MQ=255)

                 acacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGaaa                                                                           <  1:585906/91‑1 (MQ=255)

                  cacTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAg                                                                          >  2:2628728/1‑91 (MQ=255)

                    cTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGa                                                                        <  1:1986860/91‑1 (MQ=255)

                    cTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGa                                                                        <  1:1816440/91‑1 (MQ=255)

                      tAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACGTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATc                                                                      <  2:805330/91‑1 (MQ=255)

                       aaTCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCg                                                                     <  1:1602088/91‑1 (MQ=255)

                       aaTCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAACGATcc                                                                     <  1:3827269/91‑2 (MQ=255)

                        aTCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGt                                                                    <  2:3887311/91‑1 (MQ=255)

                        aTCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGt                                                                    >  2:3391526/1‑91 (MQ=255)

                           ggAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTc                                                                 <  1:3645935/91‑1 (MQ=255)

                            gAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCa                                                                <  2:1801925/91‑1 (MQ=255)

                              aTAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAac                                                              >  2:1666909/1‑91 (MQ=255)

                               tAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAaca                                                             <  1:2985921/91‑1 (MQ=255)

                               tAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAaca                                                             <  1:2119484/91‑1 (MQ=255)

                               tAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAaca                                                             <  1:1337254/91‑1 (MQ=255)

                                aGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAacac                                                            >  2:1498101/1‑91 (MQ=255)

                                    cGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGcc                                                        <  1:2988375/91‑1 (MQ=255)

                                    cGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGcc                                                        >  1:1429287/1‑91 (MQ=255)

                                         gTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGAGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGAc                                                   >  1:2995251/1‑91 (MQ=255)

                                          tGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCACCCAGACt                                                  >  1:3476662/1‑91 (MQ=255)

                                          tGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCACCGTGAGCCATTGTTGCTGGATGTGAACGGATCGTTTCAACACCGCCCAGACt                                                  >  2:941067/1‑91 (MQ=255)

                                           gATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTc                                                 >  1:1339776/1‑91 (MQ=255)

                                           gATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTc                                                 <  1:2756599/91‑1 (MQ=255)

                                           gATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTc                                                 >  2:3739015/1‑91 (MQ=255)

                                            acaCCACGTTCTTGTATCCCTTCTTGAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTGCAACACCGCCCAGACTCa                                                <  2:3659858/89‑1 (MQ=255)

                                            aTACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCa                                                >  1:951354/1‑91 (MQ=255)

                                             tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGCAAGGATCGTTTCAACACCGCCCAGACTCAc                                               >  1:1798686/1‑91 (MQ=255)

                                             tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc                                               <  2:2060623/91‑1 (MQ=255)

                                             tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCAc                                               <  2:1785243/91‑1 (MQ=255)

                                             tACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTCTCAACACCGCCCAGACTCAc                                               >  2:154929/1‑91 (MQ=255)

                                              aCCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACt                                              <  2:2276053/91‑1 (MQ=255)

                                              aCCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACt                                              <  1:2062102/91‑1 (MQ=255)

                                                 aCGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaa                                           >  1:1545843/1‑91 (MQ=255)

                                                  cGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaaa                                          <  1:3038911/91‑1 (MQ=255)

                                                  cGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGaaa                                          >  2:2116166/1‑91 (MQ=255)

                                                    ttCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACg                                        <  2:3307765/91‑1 (MQ=255)

                                                      cTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAg                                      <  1:2522565/91‑1 (MQ=255)

                                                      cTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAg                                      <  2:23961/91‑1 (MQ=255)

                                                       ttGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGt                                     >  1:2264968/1‑91 (MQ=255)

                                                        TGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACTCCGCCCAGACTCACTGAAACGAGTg                                    <  1:3688850‑M1/91‑1 (MQ=255)

                                                        TGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTg                                    <  1:3062923‑M1/91‑1 (MQ=255)

                                                         GTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTgg                                   <  2:2370819‑M1/91‑1 (MQ=255)

                                                          tctcacgctgcactacctgaagaagtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGt                                  >  1:1787866‑M2/33‑91 (MQ=255)

                                                          tctcACTCCTTGAGGTAGTGCAGCGTGGGACATTGTTGCTGGACGTGAAGGGAACGTCTCAGCACCGCCCAGACTCTCTGAGACGAGTggc                                  <  2:168432/91‑2 (MQ=255)

                                                          TCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGt                                  >  2:839275‑M1/1‑91 (MQ=255)

                                                                  cttcAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAg                          >  2:726462/1‑91 (MQ=255)

                                                                  cttcAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAg                          >  2:2025321/1‑91 (MQ=255)

                                                                     cAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGc                       >  1:2312569/1‑91 (MQ=255)

                                                                     cAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGc                       >  1:644708/1‑91 (MQ=255)

                                                                     cAGGTAGAGCAGCGTGAGACCTTGTTGCTGGATGTGAAAGGATCGCTTCAACACCGCCCAGACTCACTGAAACGAGTGCTAATGTCAGTGc                       >  2:1656179/1‑91 (MQ=255)

                                                                       ggTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCAt                     >  1:1582603/1‑91 (MQ=255)

                                                                        gTAGTGCAGCGTGAGACATTGTTGCTGGATGTGGAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATc                    <  1:3504833/91‑1 (MQ=255)

                                                                         tAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCg                   >  1:1349302/1‑91 (MQ=255)

                                                                         tAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCg                   >  1:3255984/1‑91 (MQ=255)

                                                                          aGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGa                  <  2:1811955/91‑1 (MQ=255)

                                                                          aGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGa                  <  1:3108834/91‑1 (MQ=255)

                                                                          aGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGa                  <  2:2438630/91‑1 (MQ=255)

                                                                          aGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGa                  <  1:407018/91‑1 (MQ=255)

                                                                             gCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACaa               <  2:1828556/91‑1 (MQ=255)

                                                                             gCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACaa               <  1:3183226/91‑1 (MQ=255)

                                                                             gCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCAAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACaa               <  2:3254884/91‑1 (MQ=255)

                                                                               aGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAt             >  2:2976877/1‑91 (MQ=255)

                                                                                 cGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttg           >  1:101113/1‑91 (MQ=255)

                                                                                  gtgagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgt          >  1:1230040‑M2/9‑91 (MQ=255)

                                                                                    gagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAGCACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgttg        <  1:2084569‑M2/85‑1 (MQ=255)

                                                                                    gagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgttg        >  1:221255‑M2/7‑91 (MQ=255)

                                                                                    gagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgttg        <  2:3582690‑M2/85‑1 (MQ=255)

                                                                                    gagacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAAttgttg        <  1:1511509‑M2/85‑1 (MQ=255)

                                                                                     agacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCATACTCACTGAAACGAGTGGTAATATCAGTGCATCGACAAATtgttgt       <  1:3133203‑M2/86‑1 (MQ=255)

                                                                                     agacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATtgttgt       <  1:3044971‑M2/86‑1 (MQ=255)

                                                                                     agacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATtgttgt       >  2:3832654‑M2/6‑91 (MQ=255)

                                                                                     agacaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATtgttgt       <  1:540828‑M2/86‑1 (MQ=255)

                                                                                       acaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGc     >  1:515748‑M2/4‑91 (MQ=255)

                                                                                       acaTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGc     <  1:3314407‑M2/88‑1 (MQ=255)

                                                                                         aTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCtt   >  2:1777664‑M2/2‑91 (MQ=255)

                                                                                         aTTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCtt   >  1:2449669‑M2/2‑91 (MQ=255)

                                                                                          ttgttgCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCttt  <  2:3057296/91‑1 (MQ=255)

                                                                                          ttgttgCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCttt  <  1:3583910/91‑1 (MQ=255)

CAGGATCTTCGAGACCAACACTTAATCGGAATAGACCGAAAGTGATACCACGTTCTTGTCTCACTTCTTCAGGTAGTGCAGCGTGAGACATTGTTGCTGGATGTGAAAGGATCGTTTCAACACCGCCCAGACTCACTGAAACGAGTGGTAATGTCAGTGCATCGACAAATTGTTGTGCTTT  >  USA300TCH1516_ALE/412075‑412255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.