| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 414290 = | 187 (0.920) | 15 (0.080) | 9/148 | NT | 8.6% | intergenic (‑32/‑632) | metI/spo0C | Cystathionine gamma‑synthase/O‑acetylhomoserine (thiol)‑lyase/Chromosome‑partitioning protein Spo0J |
| ? | USA300TCH1516_ALE | 414341 = | 148 (0.790) | intergenic (‑83/‑581) | metI/spo0C | Cystathionine gamma‑synthase/O‑acetylhomoserine (thiol)‑lyase/Chromosome‑partitioning protein Spo0J | |||||
TATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/414385‑414290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAAT > USA300TCH1516_ALE/414341‑414430 TATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGA < 1:125100/91‑1TATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGA < 1:125133/91‑1 ATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAA > 2:2258968/1‑91 ATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAA > 2:1460148/1‑91 TTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAG < 2:781735/91‑1 TTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAG < 1:2990929/91‑1 TTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAG < 1:2605201/91‑1 TTCAGCGATGGAATAACGAATAAAGGTGGTACTGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGC < 1:3384662/91‑1 TTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGC > 1:1995990/1‑91 TTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGC < 1:2864091/91‑1 TTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGC < 1:2886353/91‑1 TTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGC < 1:323333/91‑1 TTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGC < 1:3491498/91‑1 TCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCT < 1:901387/91‑1 CAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTT < 2:1777686/91‑1 AGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGA > 1:809514/1‑91 GCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAA > 1:1717488/1‑91 GCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAA > 2:57213/1‑91 CTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAA > 1:368158/1‑91 TTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATA > 2:2247922/1‑91 TTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATA > 2:1113915/1‑91 TTCGTCCTTTTTATCCGATTCATTCGAGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATA > 2:2248552/1‑91 TCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCT > 1:3308133/1‑91 CTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTA > 1:1746217/1‑91 CTTTTTATCCGATTCATTCGGGAACGAAGGACGGAAGCTTATGTTTCGCGGTCCCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTA > 2:2062942/1‑91 TTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAT > 2:901819/1‑91 TTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAT > 1:293745/1‑91 TTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAT > 1:293434/1‑91 TTATCCGATTCATTCGGGTACGAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCA > 1:2497772/1‑91 ATTCGGGTACGAAGGACGGAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAA > 1:3243255/1‑91 AAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGA > 1:375030/1‑91 AAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGA < 1:3515593/91‑1 AAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGA > 2:3366402/1‑91 AAGCTTATGTTTCGCGGTACCACCCTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATACGCTTACTGA > 2:99631/1‑91 AGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAA < 2:1114442/91‑1 AGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAA < 2:2304628/91‑1 AGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAA < 2:2304960/91‑1 AGCTTATGGTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAGGTAAATATGCTTGGTGAA > 1:2131935/1‑91 GCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAAC > 2:723670/1‑91 GCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAAC < 2:984488/91‑1 GCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAAC > 1:613499/1‑91 GCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAAC < 2:2368905/91‑1 GCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAAC < 2:2104976/91‑1 GCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAAC > 1:3254032/1‑91 GCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAAC < 1:1061654/91‑1 TTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAA < 2:2165857/91‑1 TTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAA > 2:3486012/1‑91 TTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAA < 1:1469542/91‑1 TTATGTTTCGCGGTACCACCTTTATTTGTGATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAA < 1:1058506/91‑1 TATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAAT > 1:818038/1‑91 TATTTCAGCGATGGAATAACAAATAAAGGTGGTACCGCGAAACATAAGCTTTCGTCCTTTTTATCCGATTCATTCGGGTACGAAGGACGGAAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/414385‑414290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAAT > USA300TCH1516_ALE/414341‑414430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |