BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	414290 =	187 (0.920)	15 (0.080)	9/148	NT	8.6%	intergenic (‑32/‑632)	metI/spo0C	Cystathionine gamma‑synthase/O‑acetylhomoserine (thiol)‑lyase/Chromosome‑partitioning protein Spo0J
*	?	USA300TCH1516_ALE	414341 =	148 (0.790)	15 (0.080)	9/148	NT	8.6%	intergenic (‑83/‑581)	metI/spo0C	Cystathionine gamma‑synthase/O‑acetylhomoserine (thiol)‑lyase/Chromosome‑partitioning protein Spo0J

Only 100 of 221 total aligned reads displayed.

TCCTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAATT  >  USA300TCH1516_ALE/414251‑414431

tCCTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTa                                                                                            <  2:2079973/91‑1 (MQ=255)

 ccTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTAt                                                                                           <  2:309523/91‑1 (MQ=255)

  cTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGGCGAAAGCTTATg                                                                                          <  1:3055767/91‑1 (MQ=255)

   ttCATATTAAGACCCTCCTATAAGAAGAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGt                                                                                         <  1:2971727/91‑1 (MQ=255)

   ttCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGt                                                                                         >  2:3516588/1‑91 (MQ=255)

   ttCATATTAAGACCCTCCTATAAAAAAAAACAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGt                                                                                         <  2:3729841/91‑1 (MQ=255)

    tCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGtt                                                                                        <  1:2318036/91‑1 (MQ=255)

    tCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGGCCTTCGTATCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGtt                                                                                        <  1:3149067/91‑1 (MQ=255)

      atatTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTc                                                                                      >  1:2375321/1‑91 (MQ=255)

           aaGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGACTGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGt                                                                                 >  1:1219520/1‑91 (MQ=255)

            aGACCCTCCTATAAGAAAAAATAAAGAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTa                                                                                <  1:3668374/91‑1 (MQ=255)

            aGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTa                                                                                >  1:3824379/1‑91 (MQ=255)

            aGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTa                                                                                >  1:931821/1‑91 (MQ=255)

              aCCCTCCTATAAGGAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTacc                                                                              >  1:2228209/1‑91 (MQ=255)

               cccTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTacca                                                                             <  1:3298601/91‑1 (MQ=255)

                cctcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTaccac                                                                            >  1:933601/1‑91 (MQ=255)

                cctcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTaccac                                                                            <  1:912307/91‑1 (MQ=255)

                 ctcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGCATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTaccacc                                                                           >  2:508567/1‑91 (MQ=255)

                 ctcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTaccacc                                                                           <  2:665197/91‑1 (MQ=255)

                 ctcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTaccacc                                                                           >  1:2179954/1‑91 (MQ=255)

                 ctcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTaccacc                                                                           <  1:1166505/91‑1 (MQ=255)

                 ctcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAACGACGAAAGCTTATGTTTCGCGGTaccacc                                                                           >  1:3167927/1‑91 (MQ=255)

                  tcctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCt                                                                          <  2:1959654/91‑1 (MQ=255)

                    ctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCttt                                                                        >  1:3016134/1‑91 (MQ=255)

                    ctATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCttt                                                                        <  1:409011/91‑1 (MQ=255)

                     tataAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTa                                                                       >  1:2165857/1‑91 (MQ=255)

                      ataAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTAt                                                                      >  2:786135/1‑91 (MQ=255)

                        aaGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTAttt                                                                    >  1:794572/1‑91 (MQ=255)

                        aaGAAAAAATAAAAAAAGCTGCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTAAGTTTCGCGGTACCACCTTTAttt                                                                    >  2:180141/1‑91 (MQ=255)

                         aGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTg                                                                   >  1:706278/1‑91 (MQ=255)

                         aGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTg                                                                   >  1:1860158/1‑91 (MQ=255)

                             aaaaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTAt                                                               <  1:564981/91‑1 (MQ=255)

                             aaaaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTAt                                                               <  2:3307490/91‑1 (MQ=255)

                             aaaaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTAt                                                               <  2:3652546/91‑1 (MQ=255)

                             aaaaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTAt                                                               <  1:3731694/91‑1 (MQ=255)

                              aaaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTAtt                                                              >  1:832634/1‑91 (MQ=255)

                              aaaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTAtt                                                              <  1:2094664/91‑1 (MQ=255)

                              aaaTAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTAtt                                                              <  1:144655/91‑1 (MQ=255)

                                 tAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCa                                                           >  1:965088/1‑91 (MQ=255)

                                 tAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCa                                                           <  1:3620827/91‑1 (MQ=255)

                                   aaaaaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATc                                                         >  2:961323/1‑91 (MQ=255)

                                    aaaaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCg                                                        >  2:429319/1‑91 (MQ=255)

                                    aaaaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCg                                                        >  2:2938664/1‑91 (MQ=255)

                                     aaaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGc                                                       >  1:3337799/1‑91 (MQ=255)

                                     aaaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGc                                                       <  1:2887940/91‑1 (MQ=255)

                                      aaaGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCt                                                      <  2:3357403/91‑1 (MQ=255)

                                        agctttcgtcctttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGa                                                    >  1:809514‑M2/51‑91 (MQ=255)

                                         gctttcgtcctttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGaa                                                   >  1:1717488‑M2/50‑91 (MQ=255)

                                         GCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGaa                                                   <  1:3491498‑M1/91‑1 (MQ=255)

                                         GCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGaa                                                   <  1:2864091‑M1/91‑1 (MQ=255)

                                          CTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGaaa                                                  <  1:2605201‑M1/91‑1 (MQ=255)

                                           TTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAAt                                                 >  2:1460148‑M1/1‑91 (MQ=255)

                                            ttcgtcctttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATa                                                >  2:1113915‑M2/47‑91 (MQ=255)

                                            ttcgtcctttttatccgattcattcgagtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATa                                                >  2:2248552‑M2/47‑91 (MQ=255)

                                            TCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATa                                                <  1:125133‑M1/91‑1 (MQ=255)

                                               gTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAAcc                                             <  2:1087488/91‑1 (MQ=255)

                                               gTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAAcc                                             >  2:155729/1‑91 (MQ=255)

                                                tcctttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCt                                            >  1:3308133‑M2/43‑91 (MQ=255)

                                                tCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCt                                            <  2:2373249/91‑1 (MQ=255)

                                                tCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCt                                            <  1:1049715/91‑1 (MQ=255)

                                                 ccTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTACGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCtt                                           <  2:2310125/91‑1 (MQ=255)

                                                  ctttttatccgattcattcgggaacgaaggacggaagcttATGTTTCGCGGTCCCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTa                                          >  2:2062942‑M2/41‑91 (MQ=255)

                                                   tttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAt                                         >  1:293745‑M2/40‑91 (MQ=255)

                                                   tttttatccgattcattcgggtacgaaggacggaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTAt                                         >  2:901819‑M2/40‑91 (MQ=255)

                                                      ttatccgattcattcgggtacgaaggacgaaagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCa                                      >  1:2497772‑M2/37‑91 (MQ=255)

                                                       tACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAg                                     >  2:2675410/1‑91 (MQ=255)

                                                       tACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAg                                     >  1:3421859/1‑91 (MQ=255)

                                                         cccGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTa                                   >  2:3021321/1‑91 (MQ=255)

                                                         cccGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTAAGTa                                   <  1:1583987/91‑1 (MQ=255)

                                                          ccGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCTGTAc                                  <  1:3125607/91‑1 (MQ=255)

                                                          ccGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTAc                                  <  1:721407/91‑1 (MQ=255)

                                                          ccGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTAc                                  <  1:1390607/91‑1 (MQ=255)

                                                           cGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACg                                 <  1:3233509/91‑1 (MQ=255)

                                                               tgaatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCAtt                             >  2:2127011/1‑91 (MQ=255)

                                                               tgaatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCAtt                             <  1:3906187/91‑1 (MQ=255)

                                                               tgaatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCAtt                             >  2:839636/1‑91 (MQ=255)

                                                               tgaatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCAtt                             <  1:2581314/91‑1 (MQ=255)

                                                                 aatCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTaa                           >  2:1763601/1‑91 (MQ=255)

                                                                   tCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTaaaa                         >  1:220572/1‑91 (MQ=255)

                                                                   tCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTaaaa                         <  2:2567961/91‑1 (MQ=255)

                                                                    cGGATAAAGAGGACGAGAGCTTATGTTTCGCGGTACCTCCTTTAGTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAg                        <  2:626945/91‑1 (MQ=255)

                                                                    cGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAg                        <  2:150039/91‑1 (MQ=255)

                                                                      gATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGATATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTa                      >  2:3543258/1‑91 (MQ=255)

                                                                       aTAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTaa                     <  1:2790389/91‑1 (MQ=255)

                                                                       aTAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTaa                     <  1:3640486/91‑1 (MQ=255)

                                                                       aTAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTaa                     <  2:17437/91‑1 (MQ=255)

                                                                        tAAAAAGTACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTaaa                    <  1:1955979/91‑1 (MQ=255)

                                                                         aaaaaGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAat                   <  1:1642014/91‑1 (MQ=255)

                                                                          aaaaGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAata                  >  2:1899839/1‑91 (MQ=255)

                                                                              ggACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCt              >  2:3863477/1‑91 (MQ=255)

                                                                                 cGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTAc           >  1:1745585/1‑91 (MQ=255)

                                                                                 cGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTAc           <  2:2450499/91‑1 (MQ=255)

                                                                                    aagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGa        >  1:375030‑M2/7‑91 (MQ=255)

                                                                                    aagcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGa        <  1:3515593‑M2/85‑1 (MQ=255)

                                                                                     agcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGaa       <  2:2304628‑M2/86‑1 (MQ=255)

                                                                                     agcttATGGTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAGGTAAATATGCTTGGTGaa       >  1:2131935‑M2/6‑91 (MQ=255)

                                                                                      gcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAAc      >  1:3254032‑M2/5‑91 (MQ=255)

                                                                                      gcttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAAc      <  1:1061654‑M2/87‑1 (MQ=255)

                                                                                        ttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACaa    >  2:3486012‑M2/3‑91 (MQ=255)

                                                                                        ttATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACaa    <  2:2165857‑M2/89‑1 (MQ=255)

TCCTTCATATTAAGACCCTCCTATAAGAAAAAATAAAAAAAGCTTCCGTCCTTCGTACCCGAATGAATCGGATAAAAAGGACGAAAGCTTATGTTTCGCGGTACCACCTTTATTTGTTATTCCATCGCTGAAATAACCTTATTCAGTACGCATTAAAAGTAAATATGCTTACTGAACAATT  >  USA300TCH1516_ALE/414251‑414431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.