| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 447070 | 195 (0.960) | 34 (0.180) | 13/152 | NT | 15.2% | intergenic (+58/‑228) | tst_1/speC_1 | Toxic shock syndrome toxin‑1/Exotoxin type C |
| ? | USA300TCH1516_ALE | = 447093 | 193 (1.000) | intergenic (+81/‑205) | tst_1/speC_1 | Toxic shock syndrome toxin‑1/Exotoxin type C | |||||
ACTAAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/446977‑447070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTTCAT < USA300TCH1516_ALE/447093‑447004 ACTAAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGG > 2:587964/1‑91ACTAAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGG > 1:95432/1‑91ACTAAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGG > 1:95433/1‑91ACTAAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGG < 2:1372863/91‑1ACTAAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGG < 2:303767/91‑1ACTAAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGG > 2:379835/1‑91ACTAAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTACGTTGAATAGTGCTTGTTATGGAAATATATGG > 2:369128/1‑91 AAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAACGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAG > 2:1454428/1‑91 AAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAG < 1:44768/91‑1 AAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAG < 1:3888409/91‑1 AAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAG < 2:1449011/91‑1 TCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCAACAGTAC < 2:1391896/91‑1 CTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑G < 2:483197/91‑1 TAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCAACAGTAC‑GT < 1:2096412/91‑1 TAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCAACAGTAC‑GT < 1:3887679/91‑1 TAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCAACAGTAC‑GT < 2:2680664/91‑1 TAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCAACAGTAC‑GT < 1:2095864/91‑1 TAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GT < 2:1568726/91‑1 TAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GT < 1:847514/91‑1 TAGTAGAAATGAAATAAAACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCAACAGTAC‑GT < 2:3861933/91‑1 AGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCAACAGTAC‑GTC < 1:3573399/91‑1 AGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCAACAGTAC‑GTC < 2:1964463/91‑1 AGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCAACAGTAC‑GTC < 2:246502/91‑1 AGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTC < 2:3375894/91‑1 AGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTC < 2:97395/91‑1 AGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTC < 1:728186/91‑1 AGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTC < 1:82539/91‑1 AGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTC < 1:1538021/91‑1 GTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCG < 1:3891161/91‑1 GTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTAGGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCG < 2:3523533/91‑1 TAGGAATGAAGTAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGC < 2:254130/91‑1 TAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGC < 2:3578659/91‑1 TAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGC < 2:3578556/91‑1 AAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCAACAGTAC‑GTCGCTTA < 1:237590/91‑1 AAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGCTTA < 2:1297754/91‑1 AAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCGTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGCTTA < 2:1297800/91‑1 AATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGCTTAA < 1:2932145/91‑1 AAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGCTTAACTTC < 1:380987/91‑1 AAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGCTTAACTTC < 2:1750710/91‑1 ATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGCTTAACTTCCA < 1:1152595/91‑1 ATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGCTTAACTTCCA < 2:940955/91‑1 CTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTG < 1:3628438/91‑1 GAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAA > 1:2158366/1‑91 GAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAA > 1:2158169/1‑91 AAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAA > 2:3106593/1‑91 GAAGCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTT > 2:606498/1‑91 GAAGCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTT > 1:3318988/1‑91 AGCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGGACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTTCA < 2:3961964/91‑1 AGCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTTCA > 2:286693/1‑91 AGCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTTCA < 1:2888291/91‑1 AGCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTTCA > 1:289828/1‑91 AGCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTTCA < 2:3960754/91‑1 AGCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTTCA > 1:1165765/1‑91 AGCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTTCA < 2:803080/91‑1 GCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTTCAT > 1:1818323/1‑91 GCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTTCAT < 1:1361627/91‑1 ACTAAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/446977‑447070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagCTAAGCAACAGTAC‑GTCGCTTAACTTCCATATATTTCCATAACAAGCACTATTCAACATAGCGCTTTGTTGTTAGAAAGTATTATTTCAT < USA300TCH1516_ALE/447093‑447004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |