| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 447070 | 195 (0.960) | 34 (0.180) | 13/152 | NT | 15.2% | intergenic (+58/‑228) | tst_1/speC_1 | Toxic shock syndrome toxin‑1/Exotoxin type C |
| ? | USA300TCH1516_ALE | = 447093 | 193 (1.000) | intergenic (+81/‑205) | tst_1/speC_1 | Toxic shock syndrome toxin‑1/Exotoxin type C | |||||
Only 100 of 290 total aligned reads displayed.
AAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCT > USA300TCH1516_ALE/446980‑447160 | aaGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAG < 1:44768‑M1/91‑1 (MQ=255) aGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGt > 2:106199/1‑91 (MQ=255) aTTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTa < 2:3141856/91‑1 (MQ=255) ttAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTaa < 1:120108/91‑1 (MQ=255) ttAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTaa < 2:1014250/91‑1 (MQ=255) ataaAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCg > 1:2971101/1‑91 (MQ=255) ataaAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCg > 1:2357216/1‑91 (MQ=255) taaAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGa < 2:2975528/91‑1 (MQ=255) aaaaTTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAc < 2:3850224/91‑1 (MQ=255) aaaaTTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAc < 1:839055/91‑1 (MQ=255) aaaTTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACg < 1:3760202/91‑1 (MQ=255) aaTTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGt > 2:3768927/1‑91 (MQ=255) aTTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTa > 2:3763308/1‑91 (MQ=255) aTTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTa > 2:305948/1‑91 (MQ=255) ttCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTGATGGAAATATATGGAAGTTAAGCGACGTAc < 2:3492241/91‑1 (MQ=255) tCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGttaagcaacagtac < 2:1391896‑M1/91‑15 (MQ=255) tCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACt < 2:3413679/91‑1 (MQ=255) tCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACt < 2:3413944/91‑1 (MQ=255) tCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACt > 1:3632805/1‑91 (MQ=255) tCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACt < 1:1423227/91‑1 (MQ=255) cTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGctaagcaacagtacg < 2:483197‑M1/91‑16 (MQ=255) tagtagAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGttaagcaacagtacgt < 1:2095864‑M1/91‑17 (MQ=255) agtagAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGttaagcaacagtacgtc < 1:3573399‑M1/91‑18 (MQ=255) agtagAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGctaagcaacagtacgtc < 1:728186‑M1/91‑18 (MQ=255) agtagAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGctaagcaacagtacgtc < 1:1538021‑M1/91‑18 (MQ=255) agtagAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGctaagcaacagtacgtc < 2:3375894‑M1/91‑18 (MQ=255) agtagAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGtt > 1:3471680/1‑91 (MQ=255) gtagAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGctaagcaacagtacgtcg < 1:3891161‑M1/91‑19 (MQ=255) gtagAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTg > 2:2112133/1‑91 (MQ=255) tagAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGctaagcaacagtacgtcgc < 2:3578659‑M1/91‑20 (MQ=255) tagAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGc > 2:2438568/1‑91 (MQ=255) tagAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGc > 2:1503330/1‑91 (MQ=255) aaatgaaatAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGttaagcaacagtacgtcgctta < 1:237590‑M1/91‑23 (MQ=255) aaatgaaatAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGctaagcaacagtacgtcgctta < 2:1297754‑M1/91‑23 (MQ=255) aatgaaatAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAg < 2:2535575/91‑1 (MQ=255) aatgaaatAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAg < 1:245068/91‑1 (MQ=255) aTGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGc > 1:1818323‑M2/1‑90 (MQ=255) tGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGct < 1:2888291‑M2/91‑3 (MQ=255) tGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGct < 2:803080‑M2/91‑3 (MQ=255) tGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGct > 2:286693‑M2/1‑89 (MQ=255) aataatACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGcttct > 2:1959258/1‑91 (MQ=255) aataatACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGcttct > 1:3286020/1‑91 (MQ=255) aataatACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGcttct < 1:2926914/91‑1 (MQ=255) aataatACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGcttct > 1:2794457/1‑91 (MQ=255) ataataCTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGctaagcaacagtacgtcgcttaacttcca < 2:940955‑M1/91‑30 (MQ=255) ataataCTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGcttctt < 1:1397899/91‑1 (MQ=255) ataataCTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGcttctt > 1:2174480/1‑91 (MQ=255) ataataCTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGcttctt < 1:250601/91‑1 (MQ=255) taataCTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCttt > 2:3914489/1‑91 (MQ=255) aCTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCttttttt < 1:1356521/91‑1 (MQ=255) aCTTTCTAACAACAAAGCGCCATGCTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTCGCCTCttttttt > 1:781199/1‑91 (MQ=255) ttCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAg > 1:1487009/1‑91 (MQ=255) ttCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAg < 1:2635651/91‑1 (MQ=255) tCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAgg > 2:3628251/1‑91 (MQ=255) tCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAgg > 2:653396/1‑91 (MQ=255) tAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAgggg < 1:1269039/91‑1 (MQ=255) acaacaAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGaa > 2:2645482/1‑91 (MQ=255) acaacaAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACATACTGTTGCTTAGCTTCTTTTTCTGAGGGGaa > 1:1704214/1‑91 (MQ=255) aacaaAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGaaaa > 1:3110453/1‑91 (MQ=255) aacaaAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGaaaa > 2:389357/1‑91 (MQ=255) aaaGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGtt < 2:1463001/91‑1 (MQ=255) taGCGCTTTGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTa > 2:623546/2‑91 (MQ=255) gcgcTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACa < 2:710663/91‑1 (MQ=255) gcgcTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACa > 1:2121823/1‑91 (MQ=255) tATGGTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAAc < 2:1535518/91‑1 (MQ=255) gTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTca > 1:3216048/1‑91 (MQ=255) gAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTcacac < 1:2563725/91‑1 (MQ=255) gAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTcacac < 2:132750/91‑1 (MQ=255) tGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAg < 1:658060/91‑1 (MQ=255) ttGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCg > 2:2342647/1‑91 (MQ=255) gTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGca < 1:1064341/91‑1 (MQ=255) gAAATATATGGAAGttaagcgacgtactgttgcttagcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaa > 1:2158366‑M1/1‑14 (MQ=255) gAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGc > 1:802266/1‑91 (MQ=255) atatatatGGCTGTGAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAATCTCACACAAACCGTCGCACCACGCa < 2:2087118/89‑1 (MQ=255) aaaTATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCa < 2:589656/91‑1 (MQ=255) aaTATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAAGAGTCGCACCACGCAt < 1:3365888/91‑1 (MQ=255) aaTATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCAt < 2:3721009/91‑1 (MQ=255) atatatGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCAtt < 1:2418213/91‑1 (MQ=255) tatatGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTa > 1:2554835/1‑91 (MQ=255) gatatGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTa < 2:1202968/90‑1 (MQ=255) atatGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTAt < 2:1147087/91‑1 (MQ=255) atatGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTAt > 1:1676567/1‑91 (MQ=255) tatGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATc > 1:2917163/1‑91 (MQ=255) tatGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATc < 1:2850417/91‑1 (MQ=255) atGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGTAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCt > 2:1817643/1‑91 (MQ=255) atGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCt > 1:3780151/1‑91 (MQ=255) tGGAAGTTAAGCGACGTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattat < 1:1152595‑M2/91‑63 (MQ=255) tGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCtt > 2:2703714/1‑91 (MQ=255) tGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCtt > 1:2746196/1‑91 (MQ=255) ggAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCttt < 2:3313333/91‑1 (MQ=255) ggAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCttt < 1:2713392/91‑1 (MQ=255) gAAGTTAAGCGACGTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattattt < 2:1750710‑M2/91‑65 (MQ=255) gAAGTTAAGCGACGTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattattt < 1:380987‑M2/91‑65 (MQ=255) gAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCtttt > 2:1704388/1‑91 (MQ=255) aaGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTg < 1:964059/91‑1 (MQ=255) aGctaagcaacagtacgtcgcttaacttccatatatttccataacaaggactattcaacatagcgctttgttgttagaaagtattatttca < 2:3961964‑M1/91‑90 (MQ=255) aGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGc < 2:3613434/91‑1 (MQ=255) aGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGc > 1:269307/1‑91 (MQ=255) gTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCt < 2:2231593/91‑1 (MQ=255) gTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCt < 1:926675/91‑1 (MQ=255) | AAGATTAATAAAATTCTAGTAGAAATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGACGTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCT > USA300TCH1516_ALE/446980‑447160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |