BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 447070	195 (0.960)	34 (0.180)	13/152	NT	15.2%	intergenic (+58/‑228)	tst_1/speC_1	Toxic shock syndrome toxin‑1/Exotoxin type C
*	?	USA300TCH1516_ALE	= 447093	193 (1.000)	34 (0.180)	13/152	NT	15.2%	intergenic (+81/‑205)	tst_1/speC_1	Toxic shock syndrome toxin‑1/Exotoxin type C

Only 100 of 270 total aligned reads displayed.

AATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTAATCATATTTTA  >  USA300TCH1516_ALE/447003‑447182

aatgaaatAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAg                                                                                           <  2:2535575/91‑1 (MQ=255)

aatgaaatAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAg                                                                                           <  1:245068/91‑1 (MQ=255)

  tGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGct                                                                                         <  2:803080‑M2/91‑3 (MQ=255)

  tGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGct                                                                                         <  2:3960754‑M2/91‑3 (MQ=255)

  tGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGct                                                                                         >  1:289828‑M2/1‑89 (MQ=255)

  tGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGct                                                                                         >  1:1165765‑M2/1‑89 (MQ=255)

     aataatACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGcttct                                                                                      >  2:1959175/1‑91 (MQ=255)

     aataatACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGcttct                                                                                      >  1:3286020/1‑91 (MQ=255)

     aataatACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGcttct                                                                                      <  1:2926914/91‑1 (MQ=255)

      ataataCTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGcttctt                                                                                     <  2:3264598/91‑1 (MQ=255)

      ataataCTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGcttctt                                                                                     <  2:239946/91‑1 (MQ=255)

      ataataCGTTCTAACAACAAAGCGCTATGTTGAATATTGCTTGTTATGGAAATATATGGAGGTTAAGCGAC‑GTACTGTTGCTTAGcttctt                                                                                     <  2:3902011/91‑1 (MQ=255)

       taataCTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCttt                                                                                    <  2:3627776/91‑1 (MQ=255)

       taataCTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCttt                                                                                    >  1:2720658/1‑91 (MQ=255)

        aataCTTTCTAACAACAAAGCGATATGTTGAATAGTGCTTGTTATGGTATTATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCtttt                                                                                   >  2:2276441/1‑91 (MQ=255)

           aCTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCttttttt                                                                                <  1:1356521/91‑1 (MQ=255)

           aCTTTCTAACAACAAAGCGCCATGCTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTCGCCTCttttttt                                                                                >  1:781199/1‑91 (MQ=255)

            cTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCGTCTTTTTTTg                                                                               <  2:3586918/91‑1 (MQ=255)

              ttCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGCTAAGCAACAGTAC‑GTCGCTTAActtccatatatttc                                                                             >  1:2158169‑M2/1‑77 (MQ=255)

               tCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAgg                                                                            >  2:653396/1‑91 (MQ=255)

               tCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAgg                                                                            >  2:3630056/1‑91 (MQ=255)

                cTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAggg                                                                           <  2:1059696/91‑1 (MQ=255)

                cTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAggg                                                                           >  1:28752/1‑91 (MQ=255)

                 tAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAgggg                                                                          <  1:3774029/91‑1 (MQ=255)

                 tAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAgggg                                                                          <  1:3518613/91‑1 (MQ=255)

                 tAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAgggg                                                                          <  1:1269039/91‑1 (MQ=255)

                   acaacaAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGaa                                                                        >  2:2645482/1‑91 (MQ=255)

                   acaacaAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑ATACTGTTGCTTAGCTTCTTTTTCTGAGGGGaa                                                                        >  1:1704214/1‑91 (MQ=255)

                    caacaaAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGaaa                                                                       >  1:3094438/1‑91 (MQ=255)

                       caaAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGcttccatatatttccataacaag                                                                    <  1:3628438‑M2/91‑24 (MQ=255)

                        aaaGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGtt                                                                   <  2:1463001/91‑1 (MQ=255)

                         taGCGCTTTGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTa                                                                  >  2:623546/2‑91 (MQ=255)

                           gcgcTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACa                                                                >  1:2121823/1‑91 (MQ=255)

                                  gTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTca                                                         >  1:3216048/1‑91 (MQ=255)

                                     gAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTcacac                                                      <  1:2563571/91‑1 (MQ=255)

                                     gAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTcacac                                                      <  2:131926/91‑1 (MQ=255)

                                     gAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTcacac                                                      <  1:746930/91‑1 (MQ=255)

                                       aTAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACaa                                                    >  1:2159038/1‑91 (MQ=255)

                                        tAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACaaa                                                   >  1:2756821/1‑91 (MQ=255)

                                           tGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAg                                                <  1:658060/91‑1 (MQ=255)

                                            gCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGt                                               >  2:2109374/1‑91 (MQ=255)

                                              ttGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCg                                             <  1:2693498/91‑1 (MQ=255)

                                                gTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGca                                           >  1:1497557/1‑91 (MQ=255)

                                                gTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGca                                           <  1:1064341/91‑1 (MQ=255)

                                                  tATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCCCACAAACAGTCGcacc                                         >  2:155975/1‑91 (MQ=255)

                                                     ggAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACg                                      <  2:301111/91‑1 (MQ=255)

                                                       aaaTATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCa                                    <  2:589656/91‑1 (MQ=255)

                                                       aaaTATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCa                                    >  1:2480138/1‑91 (MQ=255)

                                                       aaaTATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCa                                    <  2:2084943/91‑1 (MQ=255)

                                                        aaTATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAAGAGTCGCACCACGCAt                                   <  1:3365888/91‑1 (MQ=255)

                                                        aaTATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCAt                                   <  2:3726208/91‑1 (MQ=255)

                                                         atatatGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCAtt                                  <  1:2418213/91‑1 (MQ=255)

                                                         atatatGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCAtt                                  <  1:1460422/91‑1 (MQ=255)

                                                         atatatGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCAtt                                  <  1:2591609/91‑1 (MQ=255)

                                                          gatatGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTa                                 <  2:1202968/90‑1 (MQ=255)

                                                           atatGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTAt                                >  1:1676567/1‑91 (MQ=255)

                                                           atatGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTAt                                <  2:1147173/91‑1 (MQ=255)

                                                              tGGAAGTTAAGCGAC‑GTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattat                             <  2:940955‑M2/91‑63 (MQ=255)

                                                               ggAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCttt                            <  1:2713392/91‑1 (MQ=255)

                                                               ggAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCttt                            >  1:28477/1‑91 (MQ=255)

                                                               ggAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCttt                            <  2:3313333/91‑1 (MQ=255)

                                                                gAAGTTAAGCGAC‑GTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattattt                           <  1:380987‑M2/91‑65 (MQ=255)

                                                                gAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCtttt                           >  2:2693517/1‑91 (MQ=255)

                                                                gAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCtttt                           >  2:1704388/1‑91 (MQ=255)

                                                                 aaGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTg                          <  1:964059/91‑1 (MQ=255)

                                                                   gTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCt                        <  2:2162818/91‑1 (MQ=255)

                                                                   gTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCt                        <  1:25416/91‑1 (MQ=255)

                                                                   gTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCt                        <  2:1371802/91‑1 (MQ=255)

                                                                   gTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCt                        <  1:926675/91‑1 (MQ=255)

                                                                    ttAAGCGAC‑GTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattatttcatt                       <  1:2932145‑M2/91‑69 (MQ=255)

                                                                    ttAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCtt                       <  1:19274/91‑1 (MQ=255)

                                                                     tAAGCGAC‑GTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattatttcattt                      <  2:1297754‑M2/91‑70 (MQ=255)

                                                                     tAAGCGAC‑GTACTGTTGCTTAActtccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattatttcattt                      <  1:237590‑M2/91‑70 (MQ=255)

                                                                       aGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTacc                    >  2:2874854/1‑89 (MQ=255)

                                                                       aGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTaaa                    <  1:2431264/91‑1 (MQ=255)

                                                                        gCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAAt                   >  2:723772/1‑91 (MQ=255)

                                                                         cGAC‑GTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacctagcgctttgttgttagaaagtattatttcatttctac                  <  2:3523533‑M2/91‑74 (MQ=255)

                                                                         cGAC‑GTACTGTTGATTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATa                  >  2:75535/1‑91 (MQ=255)

                                                                          gAC‑GTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattatttcatttctact                 <  2:3375894‑M2/91‑75 (MQ=255)

                                                                          gAC‑GTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattatttcatttctact                 <  1:1538021‑M2/91‑75 (MQ=255)

                                                                          gAC‑GTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattatttcatttctact                 <  1:82539‑M2/91‑75 (MQ=255)

                                                                          gAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAg                 <  1:786558/91‑1 (MQ=255)

                                                                          gAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAg                 <  1:2662375/91‑1 (MQ=255)

                                                                           aC‑GTACTGTTGCTTAActtccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagttttatttcatttctacta                <  2:3861933‑M2/91‑76 (MQ=255)

                                                                           aC‑GTACTGTTGCTTAActtccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattatttcatttctacta                <  1:2095864‑M2/91‑76 (MQ=255)

                                                                            c‑GTACTGTTGCTTAGcttccatatatttccataacaagcactattcaacatagcgctttgttgttagaaagtattatttcatttctactag               <  2:483197‑M2/91‑77 (MQ=255)

                                                                            c‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTGACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCt               >  1:3955125/1‑91 (MQ=255)

                                                                            c‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTTGCACCACGCATTATCTTTTGCTTAAATAGCt               >  1:3165581/1‑91 (MQ=255)

                                                                                aCTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTaa            <  2:2735099/91‑1 (MQ=255)

                                                                                aCTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTaa            >  1:2345133/1‑91 (MQ=255)

                                                                                aCTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTaa            <  2:2461647/91‑1 (MQ=255)

                                                                                aCTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTaa            <  1:2310790/91‑1 (MQ=255)

                                                                                aCTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTaa            >  2:3439838/1‑91 (MQ=255)

                                                                                  tGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTAATc          <  1:3944479/91‑1 (MQ=255)

                                                                                  tGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTAATc          <  2:1914472/91‑1 (MQ=255)

                                                                                   gTTGCTTAGCTTCTTTTTTTGTGTGTTAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTAATCa         >  2:1757018/1‑91 (MQ=255)

                                                                                        ttAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTAATCATAttt    <  1:3855694/91‑1 (MQ=255)

                                                                                         tAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTAATCATAtttt   <  1:3914197/91‑1 (MQ=255)

                                                                                         tAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTAATCATAtttt   <  2:1482145/91‑1 (MQ=255)

                                                                                          aGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTAATCATATATTa  >  1:1383290/1‑91 (MQ=255)

AATGAAATAATACTTTCTAACAACAAAGCGCTATGTTGAATAGTGCTTGTTATGGAAATATATGGAAGTTAAGCGAC‑GTACTGTTGCTTAGCTTCTTTTTTTGAGGGGAAAAGTTACAAAACTCACACAAACAGTCGCACCACGCATTATCTTTTGCTTAAATAGCTTAATCATATTTTA  >  USA300TCH1516_ALE/447003‑447182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.