| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 459477 | 222 (1.090) | 11 (0.060) | 7/144 | NT | 5.2% | coding (538/1212 nt) | USA300HOU_RS02175 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1937075 = | 203 (1.110) | coding (518/1200 nt) | hsdS | Type‑1 restriction enzyme EcoKI specificity protein | |||||
AAATCACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/459380‑459477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcttcaAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTTC > USA300TCH1516_ALE/1937075‑1937164 AAATCACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAG < 2:2098638/91‑1AAATCACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAG < 2:2098293/91‑1AAATCACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAAAAAAAAAAAAAATAGGCAAG < 2:3700014/91‑1AAATCACGGAGTATTAAATGTTTCTGTGAATGATTTTTTTACTGTTCTAAGTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAG < 2:3668665/91‑1 ATCACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAACAAATAGGCAAGTT > 2:1271348/1‑91 TCACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTC < 2:2313867/91‑1 TCACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTC > 1:1821741/1‑91 TCACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTC < 2:686428/91‑1 TCACGGATTATTAAATGTTTCTGTAAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAAAAAAAAAAAATAGGCAAGTTC < 2:2314194/91‑1 CACGGATTATTAAGTGTTTCTGTGAATGATTTTTTTACTATTCAAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCT < 1:3958023/91‑1 CACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCT > 1:880027/1‑91 CACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCT < 1:2694151/91‑1 CACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCT < 1:2694265/91‑1 CACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCT < 2:2337773/91‑1 CGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTC > 1:3851011/1‑91 CGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTC > 2:848999/1‑91 CGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTC > 2:2103925/1‑91 CGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTC > 1:1912093/1‑91 GGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCA > 2:2289096/1‑91 GGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCA > 1:3314250/1‑91 GAAGAACAGCAAACAATAGGCAAGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTCGCAATATCTTTGAAGTTTAGACCTTCTCGA > 2:249528/1‑91 AAGAACAGCAAAAAATAGGCAAGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGAC > 1:1561025/1‑91 AGAACAGCAAAAAATAGGCAAGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACT > 1:2319397/1‑91 AACAGCAAAAAATAGGCAAGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTAC > 2:512006/1‑91 ACAGCAAAAAATAGGCAAGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACC > 2:111025/1‑91 CAGCAAAAAATAGGCAAGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCT > 1:1514252/1‑91 CAGCAAAAAATAGGCAAGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCT > 1:1565346/1‑91 CAGCAAAAAATAGGCAAGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCT > 1:1674689/1‑91 CAGCAAAAAATAGGCAAGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCT > 1:1565677/1‑91 CAGCAAAAAATAGGCAAGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCT > 1:1565762/1‑91 TAGGCAAGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTG > 1:1700401/1‑91 cttTTCTTTAAATATAGTTGGGGTGAAGATTTTTATATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGG > 2:1469046/4‑91 ttttTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAA > 2:671868/5‑91 TCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAA < 1:3194115/91‑1 TCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAA < 1:995784/91‑1 TCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAA > 1:3523481/1‑91 CTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAAT < 2:2084108/91‑1 CTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAAT < 1:1154788/91‑1 CTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAAT < 2:2325554/91‑1 TTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATT < 2:2570215/91‑1 TCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTT < 1:847831/91‑1 TCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTT > 1:1290443/1‑91 CAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTT < 1:3196568/91‑1 CAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTT < 1:3196251/91‑1 CAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTT < 1:1845151/91‑1 AAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTaa < 2:1111769/91‑3 AAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTTC > 1:2205886/1‑91 AAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTTC > 2:3724518/1‑91 AAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTTC < 1:1847665/91‑1 AAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTTC < 1:1847547/91‑1 AAATCACGGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/459380‑459477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcttcaAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTTC > USA300TCH1516_ALE/1937075‑1937164 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |