BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 459477	222 (1.090)	11 (0.060)	7/144	NT	5.2%	coding (538/1212 nt)	USA300HOU_RS02175	hypothetical protein
*	?	USA300TCH1516_ALE	1937075 =	203 (1.110)	11 (0.060)	7/144	NT	5.2%	coding (518/1200 nt)	hsdS	Type‑1 restriction enzyme EcoKI specificity protein

Only 100 of 270 total aligned reads displayed.

TGTTGTTGAAGCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTTCC  >  USA300TCH1516_ALE/1936985‑1937165

tgttgtTGAAGCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCaa                                                                                            <  2:3475609/91‑1 (MQ=40)

tgttgtTGAAGCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCaa                                                                                            <  2:2767850/91‑1 (MQ=255)

tgttgtTGAAGCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCaa                                                                                            <  1:2577234/91‑1 (MQ=255)

tgttgtTGAAGCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCaa                                                                                            >  1:1873849/1‑91 (MQ=40)

  tttttgAAGCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGCAGAACTTGCCTATTTTTTGCTGTTCTTCAAat                                                                                          >  2:572594/4‑91 (MQ=255)

  ttgttgAAGCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAat                                                                                          <  1:3100191/91‑1 (MQ=255)

   tgttgAAGCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAata                                                                                         >  2:3757547/1‑91 (MQ=255)

   tgttgAAGCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAata                                                                                         <  1:2005514/91‑1 (MQ=255)

         aGCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTg                                                                                   >  1:62649/1‑91 (MQ=255)

          gCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTgg                                                                                  >  1:1055793/1‑91 (MQ=255)

          gCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTgg                                                                                  >  2:641140/1‑91 (MQ=255)

          gCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTgg                                                                                  >  2:2318267/1‑91 (MQ=255)

            aaTTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTgggg                                                                                <  1:837106/91‑1 (MQ=255)

            aaTTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTgggg                                                                                >  2:327235/1‑91 (MQ=255)

             aTTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGt                                                                               >  1:1394078/1‑91 (MQ=255)

             aTTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGt                                                                               >  2:2505598/1‑91 (MQ=255)

              ttCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGATCTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTg                                                                              <  2:1078523/91‑1 (MQ=255)

              ttCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTg                                                                              <  1:2856232/91‑1 (MQ=255)

              ttCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTg                                                                              >  2:1300411/1‑91 (MQ=255)

              ttCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTg                                                                              <  1:2476255/91‑1 (MQ=255)

              ttCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCAGTTCTTCAAATATAGTTGGGGTg                                                                              <  1:3132652/91‑1 (MQ=255)

               tCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGa                                                                             <  2:3178291/91‑1 (MQ=255)

                cAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGaa                                                                            >  1:1095007/1‑91 (MQ=255)

                cAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGaa                                                                            <  1:1290514/91‑1 (MQ=255)

                cAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGaa                                                                            <  1:1145365/91‑1 (MQ=255)

                cAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGaa                                                                            >  2:1357460/1‑91 (MQ=255)

                 aaGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAg                                                                           >  2:3962871/1‑91 (MQ=255)

                 aaGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAg                                                                           <  2:1258487/91‑1 (MQ=255)

                  aGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGa                                                                          <  2:387440/91‑1 (MQ=255)

                    tttttGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTTGGGTGAAGAtt                                                                        <  1:3837984/91‑1 (MQ=255)

                     ttttGTTCTTCTAATTCGATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTAGGGGTGAAGAttt                                                                       <  2:3834359/91‑1 (MQ=255)

                     ttttGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGAttt                                                                       >  2:1805417/1‑91 (MQ=255)

                       ttGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGAttttt                                                                     >  1:3018533/1‑91 (MQ=255)

                         gTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTaa                                                                   >  1:3606148/1‑91 (MQ=255)

                          ttcttcTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTaaa                                                                  >  1:2926391/1‑91 (MQ=255)

                           tcttttAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAAt                                                                 >  2:551737/1‑91 (MQ=255)

                           tcttctAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAAt                                                                 >  2:264574/1‑91 (MQ=255)

                            cttctAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAAtt                                                                <  1:2711431/91‑1 (MQ=255)

                            cttctAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAAtt                                                                <  1:2071138/91‑1 (MQ=255)

                              tctAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGAGTGAAGATTTTTAAATTAg                                                              <  1:3947660/91‑1 (MQ=255)

                               ctAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGc                                                             >  1:649591/1‑91 (MQ=255)

                                 aaTTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCaa                                                           <  1:1774427/91‑1 (MQ=255)

                                  aTTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAAt                                                          <  1:327264/91‑1 (MQ=255)

                                   ttCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAAtt                                                         <  2:102937/91‑1 (MQ=255)

                                    tCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAAttt                                                        <  2:1567864/91‑1 (MQ=255)

                                     cAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTc                                                       >  1:1639879/1‑91 (MQ=255)

                                     cAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTAGTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTc                                                       <  2:3120384/91‑1 (MQ=255)

                                       aTTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCtt                                                     <  1:3548911/91‑1 (MQ=255)

                                       aTTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCtt                                                     >  2:677423/1‑91 (MQ=255)

                                        tttGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCttt                                                    <  1:1910026/91‑1 (MQ=255)

                                          tGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGa                                                  >  1:2141722/1‑91 (MQ=255)

                                          tGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGa                                                  <  1:10866/91‑1 (MQ=255)

                                           gtcggtcgAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGaa                                                 >  1:1264341/1‑91 (MQ=255)

                                            tcggtcgAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTCGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAg                                                >  1:1705531/1‑91 (MQ=255)

                                             cggtcgAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGt                                               >  1:3262822/1‑91 (MQ=255)

                                               gtcgAGTTTGCTGAAGAACTTGCCTATTTTTTGGTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGttt                                             <  1:3510461/91‑1 (MQ=255)

                                               gtcgAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGttt                                             <  1:2183438/91‑1 (MQ=255)

                                                tcgAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTa                                            <  1:1699840/91‑1 (MQ=255)

                                                  gAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGa                                          <  2:2917211/91‑1 (MQ=255)

                                                    gTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATCGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGAcc                                        >  2:3402009/1‑91 (MQ=255)

                                                    gTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTATATTAGCAATTTCTTTGATGTTTAGAcc                                        >  2:707565/1‑91 (MQ=255)

                                                    gTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGAcc                                        <  1:87894/91‑1 (MQ=255)

                                                    gTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGAcc                                        <  1:2428093/91‑1 (MQ=255)

                                                      ttGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCtt                                      <  1:2662940/91‑1 (MQ=255)

                                                       tGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTtc                                     >  2:218578/1‑91 (MQ=255)

                                                        gCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTtct                                    >  2:2440992/1‑91 (MQ=255)

                                                        gCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTtct                                    >  1:819724/1‑91 (MQ=255)

                                                           gaagaaCTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGa                                 >  1:769065/1‑91 (MQ=255)

                                                           gaagaaCTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGa                                 >  2:1716211/1‑91 (MQ=255)

                                                           gaagaaCTTGCCTATTTTTTGCTGTTCTTCAAATATAATTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGa                                 >  1:3334058/1‑91 (MQ=255)

                                                            aagaaCTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGAc                                <  1:3649797/91‑1 (MQ=255)

                                                             agaacagcaaaaaataggcaagttcttcaAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACt                               >  1:2319397‑M2/30‑91 (MQ=255)

                                                               aaCTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTAc                             <  2:2014386/91‑1 (MQ=255)

                                                                acagcaaaaaataggcaagttcttcaAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTAcc                            >  2:111025‑M2/27‑91 (MQ=255)

                                                                 cagcaaaaaataggcaagttcttcaAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCt                           >  1:1514252‑M2/26‑91 (MQ=255)

                                                                 cagcaaaaaataggcaagttcttcaAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCt                           >  1:1565346‑M2/26‑91 (MQ=255)

                                                                 cagcaaaaaataggcaagttcttcaAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCt                           >  1:1565762‑M2/26‑91 (MQ=255)

                                                                 cTTGCCTATTTTTTTTTTTTTTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCt                           >  2:811870/1‑91 (MQ=255)

                                                                 cTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCt                           <  1:1025254/91‑1 (MQ=255)

                                                                 cTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCt                           <  2:900209/91‑1 (MQ=255)

                                                                 cTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCt                           <  1:3470564/91‑1 (MQ=255)

                                                                  ttGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTc                          <  2:2512388/91‑1 (MQ=255)

                                                                  ttGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTc                          >  1:2832318/1‑91 (MQ=255)

                                                                    gCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGTAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCa                        >  2:2036575/1‑91 (MQ=255)

                                                                     ccTATTTTTTTTTGTTTTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCAc                       >  2:3044353/1‑91 (MQ=255)

                                                                     ccTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCAc                       <  2:2946929/91‑1 (MQ=255)

                                                                     ccTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCAc                       <  2:3586730/91‑1 (MQ=255)

                                                                          tttttGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTtgt                  <  2:1431897/91‑1 (MQ=255)

                                                                              tGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCGATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCaa              <  1:3149643/91‑1 (MQ=255)

                                                                              tGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCaa              <  1:2771092/91‑1 (MQ=255)

                                                                                cTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTTCACTTTGTGCAAgg            >  1:1184090/1‑91 (MQ=255)

                                                                                cTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAgg            <  2:1174715/91‑1 (MQ=255)

                                                                                cTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAgg            >  2:1469441/1‑91 (MQ=255)

                                                                                cTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAgg            <  2:1840136/91‑1 (MQ=255)

                                                                                 tGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGa           <  1:235038/91‑1 (MQ=255)

                                                                                    tcttcaAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGaaaa        <  1:995784‑M2/85‑1 (MQ=255)

                                                                                     cttcaAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAAt       <  2:2325554‑M2/86‑1 (MQ=255)

                                                                                        caAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAAtttt    <  1:3196568‑M2/89‑1 (MQ=255)

                                                                                         aAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTTc   <  1:1847547‑M2/90‑1 (MQ=255)

                                                                                          aaTATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTTcc  >  1:2503642/1‑91 (MQ=255)

TGTTGTTGAAGCAATTCAAGTTTTTGTTCTTCTAATTCAATTTGTCGGTCGAGTTTGCTGAAGAACTTGCCTATTTTTTGCTGTTCTTCAAATATAGTTGGGGTGAAGATTTTTAAATTAGCAATTTCTTTGAAGTTTAGACCTTCTCGACTACCTCCACTTTGTGCAAGGAAAATTTTCC  >  USA300TCH1516_ALE/1936985‑1937165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.