| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 459477 | 222 (1.090) | 11 (0.060) | 7/144 | NT | 5.2% | coding (538/1212 nt) | USA300HOU_RS02175 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1937075 = | 203 (1.110) | coding (518/1200 nt) | hsdS | Type‑1 restriction enzyme EcoKI specificity protein | |||||
Only 100 of 269 total aligned reads displayed.
GGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCAGAAAATTTTCTCAC > USA300TCH1516_ALE/459387‑459567 | attattAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGc > 1:2798608/1‑91 (MQ=255) attattAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGc > 2:1220029/1‑91 (MQ=255) ttattaAGAGTTTCTGTGAATGATTTTGTTACGATTCGAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCa < 2:397819/91‑1 (MQ=37) aaaTGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTc > 1:16617/1‑91 (MQ=255) tGTTTCTGTGAATGATTTTTTTACTATTCTACTTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAAGCAAGTTCTTCAGCAAACTcgac > 2:3021615/1‑91 (MQ=255) tGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTcgac > 1:1851496/1‑91 (MQ=255) tGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTcgac < 1:1314444/91‑1 (MQ=255) gTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTcgacc < 1:1712309/91‑1 (MQ=255) tctcTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTcgaacgac < 1:3114860/91‑1 (MQ=255) tCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTcgaccgac < 1:2690673/91‑1 (MQ=255) tgtgAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACaa > 2:2697872/1‑91 (MQ=255) tgtgAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACaa > 2:2821862/1‑91 (MQ=255) gtgAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACaaa < 1:2965619/91‑1 (MQ=255) gtgAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGAACGACaaa > 2:1146745/1‑91 (MQ=255) gtgAATGATTTTGTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACaaa < 2:2662606/91‑1 (MQ=255) gAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAAtt > 1:2110540/1‑91 (MQ=255) aaTGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTg > 2:3446995/1‑91 (MQ=255) tGATTTTTTTACGATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGaa < 2:3295300/91‑1 (MQ=255) tttttttACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTa > 1:1741427/1‑91 (MQ=255) tttttttACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTa < 2:2346392/91‑1 (MQ=255) ttttttACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTag > 1:80312/1‑91 (MQ=255) ttttttACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTag > 1:3283904/1‑91 (MQ=255) ttttttACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTag > 1:2085803/1‑91 (MQ=255) ttttACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTagaa < 1:360929/91‑1 (MQ=255) tttACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTagaag > 1:496921/1‑91 (MQ=255) ttACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTagaaga > 2:692099/1‑91 (MQ=255) ttACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTagaaga < 1:1078790/91‑1 (MQ=255) tACTATTCTAATTAAATATCCAAGTTTAGAAAAAAAACAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAgaagaa < 2:1984517/91‑1 (MQ=255) aCTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAAc > 1:687331/1‑91 (MQ=255) tATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACaa > 1:2393879/1‑91 (MQ=255) aTTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACaaa < 2:2129684/91‑1 (MQ=255) tCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAg > 2:3262730/1‑91 (MQ=255) cTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGc > 1:2732655/1‑91 (MQ=255) cTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGc < 1:2402082/91‑1 (MQ=255) cTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGc < 1:2031620/91‑1 (MQ=255) aaTTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCtt < 2:3098364/91‑1 (MQ=255) aaTTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCtt < 2:2980943/91‑1 (MQ=255) aaTTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCtt < 2:2561529/91‑1 (MQ=255) aTTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTg < 1:263713/91‑1 (MQ=255) aTTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTg < 2:3602680/91‑1 (MQ=255) ttAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGa < 1:1512583/91‑1 (MQ=255) tAAATATCCAAGTTTAGAAGAACAGCAAAAAATCGACAATTCCTTCAACAAACTCGACCGACAAATCGAACAAGAAGAACAAAAGCTTaaa > 2:2443836/1‑91 (MQ=17) tAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGaa < 1:3221117/91‑1 (MQ=255) aaaTATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAAt < 1:3832686/91‑1 (MQ=255) aaTATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAAtt > 1:1004029/1‑91 (MQ=255) aaTATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAAtt > 1:3030182/1‑91 (MQ=255) atatCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGTCCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTa < 1:3322868/91‑1 (MQ=255) atatCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTa > 1:193778/1‑91 (MQ=255) tatCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTAc > 1:2475283/1‑91 (MQ=255) atCCAAGTTTAGAAGAACAGCAAACAATAGGCACGTTCTTCAGCAAAATCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACt > 2:907027/1‑91 (MQ=255) atCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACt < 2:3694270/91‑1 (MQ=255) cAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTca > 2:1494681/1‑91 (MQ=255) aaGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTcaa < 2:733895/91‑1 (MQ=255) gTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTcaaca < 1:698377/91‑1 (MQ=255) gTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTcaaca < 1:924282/91‑1 (MQ=255) tttAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTcaacaa < 2:783515/91‑1 (MQ=255) tttAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTcaacaa > 1:2291203/1‑91 (MQ=255) ttAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCaacaac < 1:3953281/91‑1 (MQ=255) ttAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCaacaac < 1:1885817/91‑1 (MQ=255) ttAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCaacaac < 1:2912952/91‑1 (MQ=255) tAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAacaaca < 1:3009294/91‑1 (MQ=255) agaagaACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAg > 1:1693101/1‑91 (MQ=40) gaagaaCAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGa < 1:2364601/91‑1 (MQ=39) aagaaCAGCAAAAAATAGGCAAGTTCTTCAaatatagttggggtgaagatttttaaattagcaatttctttgaagtttagaccttctcgac > 1:1561025‑M1/1‑30 (MQ=255) aagaaCAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGaa < 2:1359709/91‑1 (MQ=38) aagaaCAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGaa > 1:3473359/1‑91 (MQ=39) agaaCAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGaaa > 1:2213046/1‑91 (MQ=39) agaaCAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGaaa < 2:505343/91‑1 (MQ=38) agaaCAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGaaa > 2:1337259/1‑91 (MQ=38) gaaCAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGaaaa < 1:1320250/91‑1 (MQ=39) aCAGCAAAAAATAGGCAAGTTCTTCAaatatagttggggtgaagatttttaaattagcaatttctttgaagtttagaccttctcgactacc > 2:111025‑M1/1‑26 (MQ=255) cAGCAAAAAATAGGCAAGTTCTTCAaatatagttggggtgaagatttttaaattagcaatttctttgaagtttagaccttctcgactacct > 1:1565762‑M1/1‑25 (MQ=255) cAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAg > 1:1614418/1‑91 (MQ=39) aGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAgg > 2:2948556/1‑91 (MQ=39) gCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGc < 1:774915/91‑1 (MQ=39) aaaaaaTAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCta > 2:3382523/1‑91 (MQ=39) aaaaTAGGCAAGTTCTTCAGCAAACTCAACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAAAAAAAGAAAAAAGGCtata < 2:3751090/91‑1 (MQ=255) aaaTAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTatat > 1:1894568/1‑91 (MQ=39) aaaTAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTatat > 1:2509471/1‑91 (MQ=39) aaTAGGCAAGTCCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATg < 2:3322403/91‑1 (MQ=37) tAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCa > 2:3854169/1‑91 (MQ=39) tAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCa < 2:1605686/91‑1 (MQ=39) tAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCa < 1:2348428/91‑1 (MQ=39) tAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCa < 2:2027243/91‑1 (MQ=39) aGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCAg < 1:1274737/91‑1 (MQ=39) ggCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCAGa < 1:1778848/91‑1 (MQ=39) ggCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCAGa < 2:1691110/91‑1 (MQ=39) cttttctttaaatatagttggggtgaagatttttatattagcaatttctttgaagtttagaccttctcgactacctccactttgtgcaagg > 2:1469046‑M1/4‑10 (MQ=255) aaGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCAGaaaa > 1:1253248/1‑91 (MQ=39) aGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCAGAAAAt > 2:2193604/1‑91 (MQ=39) aGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCAGAAAAt < 2:862562/91‑1 (MQ=39) tcttcAaatatagttggggtgaagatttttaaattagcaatttctttgaagtttagaccttctcgactacctccactttgtgcaaggaaaa < 1:3194115‑M1/91‑86 (MQ=255) tcttcAaatatagttggggtgaagatttttaaattagcaatttctttgaagtttagaccttctcgactacctccactttgtgcaaggaaaa < 1:995784‑M1/91‑86 (MQ=255) tcttcAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCAGAAAAtttt < 2:2897776/91‑1 (MQ=255) cttcAaatatagttggggtgaagatttttaaattagcaatttctttgaagtttagaccttctcgactacctccactttgtgcaaggaaaat < 1:1154788‑M1/91‑87 (MQ=255) cttcAaatatagttggggtgaagatttttaaattagcaatttctttgaagtttagaccttctcgactacctccactttgtgcaaggaaaat < 2:2084108‑M1/91‑87 (MQ=255) ttcAaatatagttggggtgaagatttttaaattagcaatttctttgaagtttagaccttctcgactacctccactttgtgcaaggaaaatt < 2:2570215‑M1/91‑88 (MQ=255) tcAaatatagttggggtgaagatttttaaattagcaatttctttgaagtttagaccttctcgactacctccactttgtgcaaggaaaattt < 1:847831‑M1/91‑89 (MQ=255) cAaatatagttggggtgaagatttttaaattagcaatttctttgaagtttagaccttctcgactacctccactttgtgcaaggaaaatttt < 1:3196568‑M1/91‑90 (MQ=255) aaatatagttggggtgaagatttttaaattagcaatttctttgaagtttagaccttctcgactacctccactttgtgcaaggaaaattttc < 1:1847547‑M1/91‑91 (MQ=255) | GGATTATTAAATGTTTCTGTGAATGATTTTTTTACTATTCTAATTAAATATCCAAGTTTAGAAGAACAGCAAAAAATAGGCAAGTTCTTCAGCAAACTCGACCGACAAATTGAATTAGAAGAACAAAAGCTTGAATTACTTCAACAACAGAAAAAAGGCTATATGCAGAAAATTTTCTCAC > USA300TCH1516_ALE/459387‑459567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |