| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 494160 | 135 (0.660) | 8 (0.040) | 4/142 | NT | 6.3% | intergenic (+109/+60) | bltD_1/USA300HOU_RS02360 | Spermine/spermidine acetyltransferase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 494184 | 120 (0.660) | intergenic (+133/+36) | bltD_1/USA300HOU_RS02360 | Spermine/spermidine acetyltransferase/hypothetical protein | |||||
AAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/494062‑494160‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgacctGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCATTA < USA300TCH1516_ALE/494184‑494095 AAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATATTAAAA > 2:817549/1‑91AAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAA < 1:3479780/91‑1AAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAA > 2:1283095/1‑91 AAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAA < 1:1423170/91‑1 AAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAA > 1:724352/1‑91 AAGCATCTTTACTCATCGTCGACCACAACAAGTA‑‑‑ATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCG < 2:3176995/91‑1 AGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAG < 1:51517/91‑1 AGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAG < 1:625717/91‑1 AGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAG > 2:2109524/1‑91 AGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAG < 1:2173163/91‑1 AGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAG < 1:625446/91‑1 AGCATCTTTACGCATCGTCGACCACAACAATTGATGATGAGTAAAGGTGCGTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAG < 2:3697735/91‑1 GCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGC > 1:2425334/1‑91 GCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGC < 1:2986544/91‑1 GCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGC < 1:182960/91‑1 GCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGC < 2:407651/91‑1 GCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTG‑TATAGATCATCGGACAATTTACTATAGTAAAAAGCG > 1:2587941/1‑91 GCATCTTTACTCATCGTCGACCACAACAATTAATGATGAAT‑AAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCG > 2:1682945/1‑91 CATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCG > 2:3240889/1‑91 CATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCG > 2:2947634/1‑91 CATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCG < 1:758366/91‑1 CATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAACTTACTATAGTAAAAAGCG < 2:111815/91‑1 ATCTTTACTCATCGTCGACCACAACAATTAATGGTGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGA < 2:1054050/91‑1 ATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGA < 1:2729679/91‑1 ATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGA < 1:1121457/91‑1 TCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGAC > 1:3448127/1‑91 TCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGAC > 1:1980814/1‑91 TTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATATATCATCGGACAATTTACTATAGTAAATAGCGACCT > 2:1378085/1‑91 ATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTGTGGATATATGTCAATTGTTCAC < 2:330657/91‑1 TTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTGTGGATATATGTCAATTGTTCACT < 1:413423/91‑1 TTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTGTGGATATATGTCAATTGTTCACT < 1:3404402/91‑1 TTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTGTGGATATATGTCAATTGTTCACT < 1:2966189/91‑1 TTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTGTGGATATATGTCAATTGTTCACT < 1:2966104/91‑1 AATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTGTGGATATATGTCAATTGTTCACTAG < 1:2264550/91‑1 TGATGAATTAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTGTGGATATATGTCAATTGTTCACTAGGT < 1:3054149/91‑1 TGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCTGTGGATATATGTCAATTGTTCACTAGGT < 1:2666927/91‑1 AAGCGACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATT < 2:1870997/91‑1 AAGCGACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATT > 2:1541796/1‑91 AAGCGACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATT > 2:1416168/1‑91 AAGCGACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATT > 2:926312/1‑91 AGCGACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTTTTATATTTTTTTGTCCGATGATCTATAACAAAAAGCAACTTTATTt > 2:2634414/1‑90 AGCGACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTC < 1:1313434/91‑1 AGCGACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTC > 1:61429/1‑91 AGCGACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTC > 1:2103198/1‑91 GCGACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCA < 2:1646505/91‑1 CGACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCAT > 2:441877/1‑91 GACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGCTGATCTATAACAAAAAGCACCTTTATTCATC > 1:1169174/1‑91 GACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATC > 1:1835747/1‑91 GACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATC > 1:3494258/1‑91 ACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCA < 1:845897/91‑1 ACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCA < 2:2509775/91‑1 ACCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCA < 1:845615/91‑1 CCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCAT < 1:1506396/91‑1 CCTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCAT < 1:1505146/91‑1 CTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGCCGATCTATCACAAAAAGCACCTTTATTCCTCATT > 2:7267/1‑91 CTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCATT > 2:2779293/1‑91 CTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCATT > 1:3610153/1‑91 CTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCATT < 1:3679582/91‑1 CTGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCATT > 1:92242/1‑91 TGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCATTA < 2:2498744/91‑1 TGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCATTA < 2:2498556/91‑1 TGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCATTA < 2:1888729/91‑1 TGTGGATATATGTAAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATAATCTATAACAAAAAGCACCTTTATTCATCATTA < 2:3458785/91‑1 AAAGCATCTTTACTCATCGTCGACCACAACAATTAATGATGAATAAAGGTGCTTTTTGTTATAGATCATCGGACAATTTACTATAGTAAAAAGCGACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/494062‑494160‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgacctGTGGATATATGTCAATTGTTCACTAGGTCGCTTTTTACTATAGTAAATTGTCCGATGATCTATAACAAAAAGCACCTTTATTCATCATTA < USA300TCH1516_ALE/494184‑494095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |