| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 511386 = | 175 (0.860) | 11 (0.060) | 7/150 | NT | 6.6% | coding (51/597 nt) | recR | Recombination protein RecR |
| ? | USA300TCH1516_ALE | 511422 = | 146 (0.770) | coding (87/597 nt) | recR | Recombination protein RecR | |||||
CTACTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/511480‑511386‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggc‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGT > USA300TCH1516_ALE/511422‑511511 CTACTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCC < 1:136545/91‑1CTACTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCC < 1:220496/91‑1CTACTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCC < 1:759350/91‑1CTACTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCC < 1:3131714/91‑1 TACTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCT > 2:601161/1‑91 TACTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCT > 2:1558084/1‑91 TACTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCT < 1:339355/91‑1 TACTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCT > 1:264047/1‑91 ACTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTG < 1:1762458/91‑1 CTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGG > 2:2817459/1‑91 tgATGCTTTGGCAAACTGAACAACATCGTCGTCTTTCGTATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGC < 2:492168/89‑1 AGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTT > 2:1250632/1‑91 AGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCAT > 1:2938770/1‑91 AGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGCAATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCAT > 1:1950433/1‑91 ACGTTGGGCTGTCTTTGGACCAATGCCTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGA > 2:2983679/1‑91 ACGTTGGGCTGTCTTTGGACCAATGCCTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGA > 2:2983518/1‑91 CGTTGGGCTGTCTTTGGACCAATGCCTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCCTTAGTAGAT > 2:387858/1‑91 CGTTGGGCTGTCTTTGGACCAATGCCTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGAT > 1:2476520/1‑91 CGTTGGGCTGTCTTTGGACCAATGCCTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGAT > 2:387848/1‑91 GTTGGGCTGTCTTTGGACCAATGCCTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTCCAGTTTGCCAAAGCATTAGTAGATG > 2:3274462/1‑91 TTGGGCTGTCTTTGGACCAATGCCTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGT > 1:3527058/1‑91 GGGCTGTCTTTGGACCAATGCCTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTA > 1:1776046/1‑91 CTGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTA < 2:1801892/91‑1 TGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGCTGTTAAGAGAGAATTAACCTATTGTAG > 1:1541077/1‑91 TGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAG > 1:3824547/1‑91 TGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAG > 1:3824349/1‑91 TGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAG > 1:2861923/1‑91 TGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAG > 2:3948195/1‑91 TGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAG > 1:2318653/1‑91 TGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAG > 2:3947220/1‑91 TGGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAG > 2:3947285/1‑91 GGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCTGTTTGCCAAAGCATTAGTAGATGTTATGAGAGAATTAACATATTGTAGC > 2:3190687/1‑91 GGC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGC > 2:1472602/1‑91 GC‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCG > 2:2780803/1‑91 C‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGT > 2:363757/1‑91 C‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGT < 2:731044/91‑1 C‑TTTTCATACCTGAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGGTAAGAGAGAATTAACATATTGTAGCGT < 2:2424337/91‑1 CTACTAATGCTTTGGCAAACTGAACAACATCGTCTTCTTTCATATCTAAGGTATGAAAAGCCAGACGTTGGGCTGTCTTTGGACCAATGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/511480‑511386‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggc‑TTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGT > USA300TCH1516_ALE/511422‑511511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |