BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	511386 =	175 (0.860)	11 (0.060)	7/150	NT	6.6%	coding (51/597 nt)	recR	Recombination protein RecR
*	?	USA300TCH1516_ALE	511422 =	146 (0.770)	11 (0.060)	7/150	NT	6.6%	coding (87/597 nt)	recR	Recombination protein RecR

Only 100 of 204 total aligned reads displayed.

ATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTA  >  USA300TCH1516_ALE/511332‑511512

atgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaattGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCt                                                                                            >  1:2938770‑M1/55‑91 (MQ=255)

 tAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCtt                                                                                           <  2:3771274/91‑1 (MQ=255)

   gATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCtttt                                                                                         >  1:3590409/1‑91 (MQ=255)

    aTGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTc                                                                                        <  1:2153671/91‑1 (MQ=255)

     tGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCa                                                                                       <  2:1295848/91‑1 (MQ=255)

      gCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCAt                                                                                      >  1:3387588/1‑91 (MQ=255)

      gCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCAt                                                                                      <  2:3212585/91‑1 (MQ=255)

      gCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCAt                                                                                      >  2:3445021/1‑91 (MQ=255)

         ttATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAcc                                                                                   >  1:2901454/1‑91 (MQ=255)

           aTCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCtt                                                                                 >  2:1963168/1‑91 (MQ=255)

           aTCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCtt                                                                                 >  2:2609867/1‑91 (MQ=255)

           aTCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCtt                                                                                 >  1:2052931/1‑91 (MQ=255)

               ggAACCTATAGCGAAGCTTGTGGGTAGCGTTATGAGATTGCCAGGCATTGGTCCAAGGACAGCCCAACGTCTGGCTTTTCATATCTAAggt                                                                             <  2:2297538/90‑3 (MQ=255)

               aGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGat                                                                             <  1:933461/91‑1 (MQ=255)

               aGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGat                                                                             >  2:3137832/1‑91 (MQ=255)

                gAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGata                                                                            >  2:2518599/1‑91 (MQ=255)

                gAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGata                                                                            <  1:2596641/91‑1 (MQ=255)

                  aCCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATg                                                                          >  1:1223405/1‑91 (MQ=255)

                  aCCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATg                                                                          >  2:2582258/1‑91 (MQ=255)

                  aCCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATg                                                                          >  2:772886/1‑91 (MQ=255)

                  aCCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATg                                                                          <  1:1546631/91‑1 (MQ=255)

                   ccTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGa                                                                         >  2:833720/1‑91 (MQ=255)

                    cTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATATCTAAGGTATGaa                                                                        <  1:3459122/91‑1 (MQ=255)

                    cTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGaa                                                                        >  1:572682/1‑91 (MQ=255)

                     tataTCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGaaa                                                                       >  1:1053431/1‑91 (MQ=255)

                     tataTCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGaaa                                                                       >  2:617925/1‑91 (MQ=255)

                      atatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaag                                                                      <  2:1661758/91‑1 (MQ=255)

                      atatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaag                                                                      <  1:3393868/91‑1 (MQ=255)

                       tatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaaga                                                                     >  1:2088184/1‑91 (MQ=255)

                       tatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaaga                                                                     <  1:456600/91‑1 (MQ=255)

                         tCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaagaag                                                                   >  1:2139095/1‑91 (MQ=255)

                         tCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaagaag                                                                   <  2:1385138/91‑1 (MQ=255)

                          cAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAagaaga                                                                  >  1:2633150/1‑91 (MQ=255)

                            aaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACg                                                                >  1:2239696/1‑91 (MQ=255)

                            aaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACg                                                                >  1:3024345/1‑91 (MQ=255)

                             aaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGa                                                               <  2:644726/91‑1 (MQ=255)

                             aaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGa                                                               <  2:2980570/91‑1 (MQ=255)

                             aaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGa                                                               >  2:38610/1‑91 (MQ=255)

                                 tATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgtt                                                           <  2:2645744/91‑1 (MQ=255)

                                  aTTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttg                                                          >  1:3521863/1‑91 (MQ=255)

                                   ttGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttgt                                                         <  1:2509817/91‑1 (MQ=255)

                                   ttGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttgt                                                         <  1:1426898/91‑1 (MQ=255)

                                   ttGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGACTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttgt                                                         >  2:1045127/1‑91 (MQ=255)

                                    tGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATgttgtt                                                        >  1:623067/1‑91 (MQ=255)

                                    tGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATgttgtt                                                        >  2:3948731/1‑91 (MQ=255)

                                    tGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATgttgtt                                                        <  1:1268272/91‑1 (MQ=255)

                                    tGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTGCATACCTTAGATATGAAAGAAGACGATgttgtt                                                        <  2:1230382/91‑1 (MQ=255)

                                        aGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGt                                                    <  2:2542868/91‑1 (MQ=255)

                                         gCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGtt                                                   >  2:1448486/1‑91 (MQ=255)

                                          aggtatgaaaagccagacgttgggctgtctttggaccaatgcctggcaATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGttt                                                  >  2:1250632‑M2/49‑91 (MQ=255)

                                           tttATGAAATTGCCAGGCATTGGTCCAAATACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTg                                                 <  1:3173031/91‑1 (MQ=255)

                                              aTGAAATTGCCAGGCATTGGTCCAAAGACAGACCAACGTCTGGCTTTTCATACGTTAGATATGAAAGCAGACGATGTTGTTCAGTTTGCCa                                              <  1:3158206/91‑1 (MQ=255)

                                               tGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCaa                                             >  1:40373/1‑91 (MQ=255)

                                                  aaTTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGc                                          <  1:1640899/91‑1 (MQ=255)

                                                   aTTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCa                                         <  2:3879906/91‑1 (MQ=255)

                                                   aTTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCa                                         >  1:3811024/1‑91 (MQ=255)

                                                   aTTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTGTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCa                                         <  1:1897402/91‑1 (MQ=255)

                                                    agccagacgttgggctgtctttggaccaatgcctggcaATTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCAt                                        >  1:1950433‑M2/39‑91 (MQ=255)

                                                     tGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCAtt                                       >  1:1345300/1‑91 (MQ=255)

                                                     tGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCAtt                                       <  1:2618605/91‑1 (MQ=255)

                                                      GCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATACGAAAGACGACGATGTTGTTCAGTTTGCCAAAGcatca                                      <  2:492168‑M1/91‑3 (MQ=255)

                                                        CAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATtagt                                    <  1:1762458‑M1/91‑1 (MQ=255)

                                                         AGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATtagta                                   >  2:1558084‑M1/1‑91 (MQ=255)

                                                          GGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATtagtag                                  <  1:759350‑M1/91‑1 (MQ=255)

                                                           acgttgggctgtctttggaccaatgcctggcTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGa                                 >  2:2983679‑M2/32‑91 (MQ=255)

                                                            cgttgggctgtctttggaccaatgcctggcTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGAt                                >  2:387848‑M2/31‑91 (MQ=255)

                                                             gttgggctgtctttggaccaatgcctggcTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTCCAGTTTGCCAAAGCATTAGTAGATg                               >  2:3274462‑M2/30‑91 (MQ=255)

                                                             aTTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATg                               >  1:686640/1‑91 (MQ=255)

                                                              ttgggctgtctttggaccaatgcctggcTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGt                              >  1:3527058‑M2/29‑91 (MQ=255)

                                                               tGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGtt                             <  1:2952639/91‑1 (MQ=255)

                                                                ggTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTa                            >  2:3569587/1‑91 (MQ=255)

                                                                ggTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTa                            <  1:1449411/91‑1 (MQ=255)

                                                                  tCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAag                          <  1:2812523/91‑1 (MQ=255)

                                                                   ccAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAaga                         >  2:3239995/1‑91 (MQ=255)

                                                                    cAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAagag                        <  2:1856445/91‑1 (MQ=255)

                                                                    cAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAagag                        >  1:1246460/1‑91 (MQ=255)

                                                                    cAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAagag                        >  1:1014131/1‑91 (MQ=255)

                                                                      aaGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAagagag                      >  2:1162062/1‑91 (MQ=255)

                                                                       aGACAGCCCAACGTCTGGCTTTTCATATCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAgagaga                     <  2:323091/91‑1 (MQ=255)

                                                                            gCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTaa                >  2:3932484/1‑91 (MQ=255)

                                                                             cccAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAAc               <  2:3083931/91‑1 (MQ=255)

                                                                             cccAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAAc               >  2:576626/1‑91 (MQ=255)

                                                                               cAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACat             >  1:2807270/1‑91 (MQ=255)

                                                                               cAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACat             >  1:2807699/1‑91 (MQ=255)

                                                                               cAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACat             >  1:2807527/1‑91 (MQ=255)

                                                                                aaCGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACata            <  1:2444824/91‑1 (MQ=255)

                                                                                 aCGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACatat           >  1:3787222/1‑91 (MQ=255)

                                                                                  cGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATAtt          >  1:1783191/1‑91 (MQ=255)

                                                                                  cGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATAtt          <  2:849335/91‑1 (MQ=255)

                                                                                  cGTCGGGCTTTTCATACCGTAGAGATGAAAGAAGGCGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATAtt          <  2:76619/91‑1 (MQ=255)

                                                                                   gTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTg         <  2:2849627/91‑1 (MQ=255)

                                                                                      tggcTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAg      >  2:3947285‑M2/5‑91 (MQ=255)

                                                                                      tggcTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAg      >  1:2861923‑M2/5‑91 (MQ=255)

                                                                                      tggcTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAg      >  1:2318653‑M2/5‑91 (MQ=255)

                                                                                      tggcTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAg      >  1:3824547‑M2/5‑91 (MQ=255)

                                                                                       ggcTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCTGTTTGCCAAAGCATTAGTAGATGTTATGAGAGAATTAACATATTGTAGc     >  2:3190687‑M2/4‑91 (MQ=255)

                                                                                        gcTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCg    >  2:2780803‑M2/3‑91 (MQ=255)

                                                                                         cTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGt   <  2:731044‑M2/90‑1 (MQ=255)

                                                                                         cTTTTCATACCTGAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGGTAAGAGAGAATTAACATATTGTAGCGt   <  2:2424337‑M2/90‑1 (MQ=255)

                                                                                          ttttCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTa  <  2:2811998/91‑1 (MQ=255)

ATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAATTAACATATTGTAGCGTA  >  USA300TCH1516_ALE/511332‑511512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.