New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 511386 =175 (0.860)11 (0.060) 7/150 NT 6.6% coding (51/597 nt) recR Recombination protein RecR
?USA300TCH1516_ALE 511422 = 146 (0.770)coding (87/597 nt) recR Recombination protein RecR

Only 100 of 217 total aligned reads displayed.

ACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTA  >  USA300TCH1516_ALE/511296‑511476
                                                                                          |                                                                                          
acgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaaag                                                                                            <  2:731044‑M1/1‑1 (MQ=255)
acgctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaaag                                                                                            >  2:363757‑M1/91‑91 (MQ=255)
  gctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaaaGcc                                                                                          >  2:1472602‑M1/89‑91 (MQ=255)
  gctacaatatgttaattctctcataacatctactaatgctttggcaaacagaacaacatcgtcttctttcatatctaaggtatgaaaaGcc                                                                                          >  2:3190687‑M1/89‑91 (MQ=255)
  aTACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGcc                                                                                          <  1:2696155/91‑1 (MQ=255)
   ctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaaaGCCa                                                                                         >  1:2861923‑M1/88‑91 (MQ=255)
   ctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaaaGCCa                                                                                         >  2:3947220‑M1/88‑91 (MQ=255)
   ctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaaaGCCa                                                                                         >  2:3948195‑M1/88‑91 (MQ=255)
   ctacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaaaGCCa                                                                                         >  1:3824547‑M1/88‑91 (MQ=255)
   ctacaataggttaattctctcttaacagctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaaaGCCa                                                                                         >  1:1541077‑M1/88‑91 (MQ=255)
    tacaatatgttaattctctcttaacatctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaaaGCCAg                                                                                        <  2:1801892‑M1/5‑1 (MQ=255)
    aCTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAg                                                                                        <  1:2884107/91‑1 (MQ=255)
    aCTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAg                                                                                        >  2:2296014/1‑91 (MQ=255)
     cTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAgg                                                                                       <  1:3710141/91‑1 (MQ=255)
     cTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAgg                                                                                       >  2:2562730/1‑91 (MQ=255)
     cTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAgg                                                                                       >  2:2511370/1‑91 (MQ=255)
     cTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAgg                                                                                       >  1:481435/1‑91 (MQ=255)
       cAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCa                                                                                     >  1:1755405/1‑91 (MQ=255)
       cAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCa                                                                                     >  2:376287/1‑91 (MQ=255)
        aaGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCAt                                                                                    <  2:2840736/91‑1 (MQ=255)
        aaGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCAt                                                                                    <  2:82709/91‑1 (MQ=255)
          ggCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTg                                                                                  <  1:781818/91‑1 (MQ=255)
           gCTTAAACATCCCTGGAATGTGATCATAGCTGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTgg                                                                                 >  2:1257929/1‑91 (MQ=255)
           gCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTgg                                                                                 <  1:958793/91‑1 (MQ=255)
            cTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGt                                                                                <  2:1604285/91‑1 (MQ=255)
             ttAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTc                                                                               <  1:2521/91‑1 (MQ=255)
             ttAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTc                                                                               <  2:2924822/91‑1 (MQ=255)
               aaaCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCa                                                                             >  2:1305569/1‑91 (MQ=255)
               aaaCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCa                                                                             >  1:1060610/1‑91 (MQ=255)
               aaaCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCa                                                                             >  1:1283005/1‑91 (MQ=255)
                 aCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCaaa                                                                           >  2:2689582/1‑91 (MQ=255)
                 aCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCaaa                                                                           >  2:2689626/1‑91 (MQ=255)
                 aCATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCaaa                                                                           >  1:3531510/1‑91 (MQ=255)
                   aTCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGa                                                                         <  1:1611235/91‑1 (MQ=255)
                    tCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAGTTGCCAGGCATTGGCCCGAAGAc                                                                        >  2:1382549/1‑91 (MQ=255)
                    tCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGAc                                                                        >  2:1825721/1‑91 (MQ=255)
                      ccTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAg                                                                      <  2:2375827/91‑1 (MQ=255)
                      ccTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAg                                                                      >  1:901396/1‑91 (MQ=255)
                      ccTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAg                                                                      >  2:3959924/1‑91 (MQ=255)
                       cTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGc                                                                     <  1:707008/91‑1 (MQ=255)
                         ggAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGccc                                                                   <  2:1236206/91‑1 (MQ=255)
                         ggAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGccc                                                                   <  2:846430/91‑1 (MQ=255)
                         ggAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGccc                                                                   <  1:1860783/91‑1 (MQ=255)
                            catctactaatgctttggcaaactggacaacatcgtcttctttcatatctaaggtatgaaaaGCCAGGCATTGGTCCAAAGACAGCCCAAc                                                                >  2:3274462‑M1/63‑91 (MQ=255)
                            aTGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAAc                                                                <  2:2512633/91‑1 (MQ=255)
                            aTGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAAc                                                                >  2:2526604/1‑91 (MQ=255)
                            aTGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAAc                                                                <  2:3161531/91‑1 (MQ=255)
                             tgtgATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACg                                                               <  2:2467021/91‑1 (MQ=255)
                             tgtgATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACg                                                               >  1:1703366/1‑91 (MQ=255)
                             atctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaaaGCCAGGCATTGGTCCAAAGACAGCCCAACg                                                               >  1:2476520‑M1/62‑91 (MQ=255)
                              tctactaatgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaaaGCCAGGCATTGGTCCAAAGACAGCCCAACGt                                                              >  2:2983518‑M1/61‑91 (MQ=255)
                              gtgATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGt                                                              >  1:1758558/1‑91 (MQ=255)
                               tgATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTc                                                             <  1:3716212/91‑1 (MQ=255)
                               tgATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTc                                                             <  2:555088/91‑1 (MQ=255)
                                gATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCt                                                            >  2:1141153/1‑91 (MQ=255)
                                    atgctttggcaaactgaacaacatcgtcttctttcatatctaaggtatgaaattGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCt                                                        >  1:1950433‑M1/55‑91 (MQ=255)
                                     tAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAGGACAGCCCAACGTCTGGCtt                                                       <  2:3771324/91‑1 (MQ=255)
                                      aGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCttt                                                      <  2:2646148/91‑1 (MQ=255)
                                         tGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCa                                                   >  1:348270/1‑91 (MQ=255)
                                         tGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCa                                                   <  1:550426/91‑1 (MQ=255)
                                          gCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCAt                                                  >  2:3445021/1‑91 (MQ=255)
                                          gCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCAt                                                  <  2:3212585/91‑1 (MQ=255)
                                          gCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCAt                                                  >  1:3387588/1‑91 (MQ=255)
                                             ttATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATAcc                                               >  1:593822/1‑91 (MQ=255)
                                               aTCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCtt                                             >  2:1963168/1‑91 (MQ=255)
                                               aTCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCtt                                             >  2:2609867/1‑91 (MQ=255)
                                               aTCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCtt                                             >  1:2052931/1‑91 (MQ=255)
                                                   aGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGat                                         >  2:3137832/1‑91 (MQ=255)
                                                    gAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGata                                        <  1:2596641/91‑1 (MQ=255)
                                                      aCCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATg                                      >  1:1223405/1‑91 (MQ=255)
                                                      aCCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATg                                      >  2:772885/1‑91 (MQ=255)
                                                      aCCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATg                                      >  2:2582258/1‑91 (MQ=255)
                                                        cTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATATCTAAGGTATGaa                                    <  1:3459122/91‑1 (MQ=255)
                                                         tataTCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGaaa                                   >  1:665368/1‑91 (MQ=255)
                                                          atatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaag                                  <  2:1229427/91‑1 (MQ=255)
                                                          atatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaag                                  <  1:3393900/91‑1 (MQ=255)
                                                           tatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaaga                                 >  1:2088184/1‑91 (MQ=255)
                                                           tatCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaaga                                 >  2:1397306/1‑91 (MQ=255)
                                                            atCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaagaa                                >  1:1033613/1‑91 (MQ=255)
                                                             tCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAaagaag                               >  1:2139095/1‑91 (MQ=255)
                                                              cAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAagaaga                              >  1:2633150/1‑91 (MQ=255)
                                                                aaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACg                            >  1:2239696/1‑91 (MQ=255)
                                                                aaaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACg                            >  1:3024345/1‑91 (MQ=255)
                                                                 aaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGa                           <  2:644726/91‑1 (MQ=255)
                                                                 aaCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGa                           >  1:454547/1‑91 (MQ=255)
                                                                      aTTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttg                      >  2:2993435/1‑91 (MQ=255)
                                                                      aTTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttg                      >  1:3521901/1‑91 (MQ=255)
                                                                       ttGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGACTGGCTTTTCATACCTTAGATATGAAAGAAGACGAtgttgt                     >  2:1045127/1‑91 (MQ=255)
                                                                        tGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATgttgtt                    <  1:1268053/91‑1 (MQ=255)
                                                                            aGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGt                <  1:2321535/91‑1 (MQ=255)
                                                                               tttATGAAATTGCCAGGCATTGGTCCAAATACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTg             <  1:3173031/91‑1 (MQ=255)
                                                                               tttATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTg             <  2:2807310/91‑1 (MQ=255)
                                                                                 tATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGcc           >  2:3873943/1‑91 (MQ=255)
                                                                                  aTGAAATTGCCAGGCATTGGTCCAAAGACAGACCAACGTCTGGCTTTTCATACGTTAGATATGAAAGCAGACGATGTTGTTCAGTTTGCCa          <  1:3158206/91‑1 (MQ=255)
                                                                                   tGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCaa         >  1:2920296/1‑91 (MQ=255)
                                                                                       aTTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCa     >  1:3811024/1‑91 (MQ=255)
                                                                                       aTTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCa     <  2:3879906/91‑1 (MQ=255)
                                                                                       aTTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTGTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCa     <  1:1897402/91‑1 (MQ=255)
                                                                                         tGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCAtt   >  1:1345300/1‑91 (MQ=255)
                                                                                          GCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATACGAAAGACGACGATGTTGTTCAGTTTGCCAAAGcatca  <  2:492168‑M1/91‑3 (MQ=255)
                                                                                          |                                                                                          
ACATACTCAAGGCTTAAACATCCCTGGAATGTGATCATAGATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACGTCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTA  >  USA300TCH1516_ALE/511296‑511476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.