| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 511972 | 199 (0.980) | 12 (0.060) | 10/154 | NT | 6.2% | intergenic (+40/‑6723) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 512004 | 174 (0.890) | intergenic (+72/‑6691) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
ATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/511880‑511972‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaAAAAAGCCACAATGATTACACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACC < USA300TCH1516_ALE/512004‑511915 ATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGT < 2:2446948/91‑1 TGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTA > 1:2742055/1‑91 GCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA < 2:1532613/91‑1 GCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA < 2:32747/91‑1 GCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACCATAGTAA < 2:1549280/91‑1 AGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTACACTG < 1:1581960/91‑1 AGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTACACTG < 1:2796246/91‑1 GCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTACACTGT < 1:1279025/91‑1 CAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTACACTGTG < 2:975665/91‑1 AATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTTCACTGTGA < 2:3388487/91‑1 ATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTACACTGTGAC < 2:3695091/91‑1 ATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTACACTGTGAC < 2:2817995/91‑1 CAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAAAAAAGCCACAATGATTACACTGTGACTTTT < 1:2999934/91‑1 GTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGCCACAATGATTACACTGTGACTTTTCTT < 2:2427364/91‑1 AGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAAAAAAGCCACAATGATTACACTGTGACTTTTCTTAC < 2:1712422/91‑1 GAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAAAAAAGCCACAATGATTACACTGTGACTTTTCTTACTATAGT < 2:1916137/91‑1 TAATGTCTTCTATTTAACATTTTTGATTTTAATACTATAGTAAAAAAAGCCACAATGATTACACTGTGACTTTTCTTACTATAGTATTAAA < 1:934324/91‑1 TAAAAAAAGCCACAATGATTACACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTA > 2:239356/1‑91 TAAAAAAAGCCACAATGATTACACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTA < 1:579357/91‑1 AAAAAAGCCACAATGATTACACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACC > 1:1330933/1‑91 AAAAAAGCCACAATGATTACACTGTGACTTTTCAAACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACC > 2:2882145/1‑91 ATGCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/511880‑511972‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaAAAAAGCCACAATGATTACACTGTGACTTTTCTTACTATAGTATTAAAATCAAAAATGTTTAATAGAAGACATTACATTTCTGTTCTACC < USA300TCH1516_ALE/512004‑511915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |