BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 511972	199 (0.980)	12 (0.060)	10/154	NT	6.2%	intergenic (+40/‑6723)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
*	?	USA300TCH1516_ALE	= 512004	174 (0.890)	12 (0.060)	10/154	NT	6.2%	intergenic (+72/‑6691)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase

Only 100 of 249 total aligned reads displayed.

GCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCT  >  USA300TCH1516_ALE/511882‑512062

gCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAA                                                                                            <  2:1532613‑M1/91‑1 (MQ=255)

gCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACCATAGTAA                                                                                            <  2:1549280‑M1/91‑1 (MQ=255)

    aCGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGaaa                                                                                        <  2:571113/91‑1 (MQ=255)

    aCGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGaaa                                                                                        >  1:2252653/1‑91 (MQ=255)

     cGAGGTAACATTATCTAAGGCAGTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAGCATTTTTGATTTTAATACTATAGTAAGaaaa                                                                                       <  2:3012691/91‑1 (MQ=255)

        aGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTc                                                                                    <  1:1581828/91‑1 (MQ=255)

        aGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTc                                                                                    >  1:1650107/1‑91 (MQ=255)

         gTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTca                                                                                   <  1:3111206/91‑1 (MQ=255)

           aaCATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTcaca                                                                                 >  1:1988433/1‑91 (MQ=255)

             cATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAgt                                                                               >  2:2735169/1‑91 (MQ=255)

             cATTATCCAAAGCAATCGCAGGTAGAACAGAAAGGTAATGTCTTCTATTAAACAATTTTGATCTTAATACAATCGTCAGAAACGTCACAgc                                                                               >  2:1265635/1‑90 (MQ=255)

              aTTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAgtg                                                                              >  2:1095310/1‑91 (MQ=255)

               ttATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGACAAGTCACAgtgt                                                                             >  2:3284911/1‑91 (MQ=255)

               ttATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAgtgt                                                                             >  2:991571/1‑91 (MQ=255)

               ttATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAgtgt                                                                             <  1:814273/91‑1 (MQ=255)

                tATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTa                                                                            >  1:2761261/1‑91 (MQ=255)

                  tCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAAt                                                                          >  2:1991912/1‑91 (MQ=255)

                   cTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATc                                                                         >  1:1888565/1‑91 (MQ=255)

                   cTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATc                                                                         >  2:66907/1‑91 (MQ=255)

                    tAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCa                                                                        >  1:823750/1‑91 (MQ=255)

                     aaaGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCAt                                                                       <  1:322608/91‑1 (MQ=255)

                       aGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATtg                                                                     >  2:2313237/1‑91 (MQ=255)

                       aGCAATCGCAGGTAGAACAGAAATGTAATGTCGTCTATTAAACATTTTTGATTTTAATGCTATAGTAAGAAAAGTCACAGTGTAATCAGtg                                                                     <  2:1352796/91‑1 (MQ=255)

                        gCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATtgt                                                                    >  1:2531260/1‑91 (MQ=255)

                         cAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATtgtg                                                                   <  1:2953942/91‑1 (MQ=255)

                          aaTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTgg                                                                  <  2:3080441/91‑1 (MQ=255)

                          aaTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTgg                                                                  <  2:161057/91‑1 (MQ=255)

                           aTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAgaaaagccacaatgattacactgtgac                                                                 <  2:2817995‑M1/91‑28 (MQ=255)

                           aTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGc                                                                 >  1:3466513/1‑91 (MQ=255)

                           aTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGc                                                                 >  1:901393/1‑91 (MQ=255)

                           aTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGc                                                                 <  1:2216718/91‑1 (MQ=255)

                           aTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGc                                                                 <  2:3794999/91‑1 (MQ=255)

                           aTCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAACCATTGTGGc                                                                 >  1:3781686/1‑91 (MQ=255)

                            tCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCt                                                                <  1:2468297/91‑1 (MQ=255)

                              gaaGGTAGAACAGAGATGTAATGTCTTCGATTAAACATTTGTGATTTTAATACTATAGTAAGAAGAGTCACAGTGTAATCATTGTGGCttt                                                              <  2:2579071/89‑1 (MQ=255)

                              gCAGGTAGAACAGAGATGTAATGTCTTCTATGAAGCATTTTTGATTTTAATACTATAGGAAGAAAAGTCACAGTGTAATCATTGTGGCttt                                                              <  2:2579371/91‑1 (MQ=255)

                                   tAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTtta                                                         <  1:579357‑M2/91‑4 (MQ=255)

                                    aGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAaaaaagccacaatgattacactgtgacttttcttac                                                        <  2:1712422‑M1/91‑37 (MQ=255)

                                     gAACAGCAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtg                                                       >  1:3081984/1‑91 (MQ=255)

                                     gAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtg                                                       >  1:2318156/1‑91 (MQ=255)

                                     gAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtg                                                       >  1:1298624/1‑91 (MQ=255)

                                      aaCAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtgg                                                      <  1:3906991/91‑1 (MQ=255)

                                      aaCAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtgg                                                      <  2:3911289/91‑1 (MQ=255)

                                        cAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtg                                                    <  2:2080156/91‑1 (MQ=255)

                                        cAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtg                                                    <  2:2192005/91‑1 (MQ=255)

                                        cAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtg                                                    <  1:1103629/91‑1 (MQ=255)

                                        cAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtg                                                    >  1:3527920/1‑91 (MQ=255)

                                         aGAAATGTAATGTCTGCTATTAAACATTTTTGATTGTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgt                                                   <  2:2571781/91‑1 (MQ=255)

                                           aaaTGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtgg                                                 <  1:3280195/91‑1 (MQ=255)

                                           aaaTGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGACACAGTGTAATCATTGTGGCTTTTTTTAtggtgtga                                                 >  2:3917562/1‑90 (MQ=255)

                                             atgtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtggtg                                               <  1:748406/91‑1 (MQ=255)

                                             atgtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtggtg                                               >  1:2099208/1‑91 (MQ=255)

                                              tgtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATggtgtggtgt                                              >  1:2666882/1‑91 (MQ=255)

                                               gtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGgtgtggtgtg                                             >  1:1457843/1‑91 (MQ=255)

                                               gtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGgtgtggtgtg                                             >  2:515320/1‑91 (MQ=255)

                                                taatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGa                                            <  1:795172/91‑1 (MQ=255)

                                                taatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGa                                            <  1:2139124/91‑1 (MQ=255)

                                                 aatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGAt                                           <  2:409428/91‑1 (MQ=255)

                                                  atgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATg                                          >  1:3012744/1‑91 (MQ=255)

                                                  atgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATg                                          <  1:2641114/91‑1 (MQ=255)

                                                  atgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATg                                          >  1:596262/1‑91 (MQ=255)

                                                    gtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGta                                        >  2:2354417/1‑91 (MQ=255)

                                                    gtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGta                                        <  2:862348/91‑1 (MQ=255)

                                                       ttctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGtacta                                     <  1:495409/91‑1 (MQ=255)

                                                        tctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGtactac                                    <  1:2766868/91‑1 (MQ=255)

                                                           aTTAAACATTTTTTATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACttt                                 >  2:2987991/1‑91 (MQ=255)

                                                           aTTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACttt                                 >  1:335679/1‑91 (MQ=255)

                                                           aTTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACttt                                 <  1:2183580/91‑1 (MQ=255)

                                                           aTTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACttt                                 >  1:2813142/1‑91 (MQ=255)

                                                               aaCATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTAttt                             <  2:929532/91‑1 (MQ=255)

                                                               aaCATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTAttt                             <  2:119130/91‑1 (MQ=255)

                                                                aCATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTg                            >  2:869579/1‑91 (MQ=255)

                                                                 cATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGc                           >  2:1897916/1‑91 (MQ=255)

                                                                   tttttGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                         <  2:1755405/91‑1 (MQ=255)

                                                                   tttttGATTTTAATACGATAGTAAGAAAAGTCACAGTGGAATCATTGTGGCTTGTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                         <  2:1629406/91‑1 (MQ=255)

                                                                        gATTTTAATACTATAGTAAGAAGAGTCACAGTGTAATCATTGTGGCTTTGTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTgg                    <  2:3005555/91‑1 (MQ=255)

                                                                        gATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTgg                    >  2:345190/1‑91 (MQ=255)

                                                                        gATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTgg                    >  2:253176/1‑91 (MQ=255)

                                                                          ttttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCg                  <  2:291741/91‑1 (MQ=255)

                                                                          ttttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCg                  >  2:1323819/1‑91 (MQ=255)

                                                                          ttttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCg                  <  2:686640/91‑1 (MQ=255)

                                                                           tttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTttactatagtattaaaatcaaaaatgttaaatagaagacatta                 <  1:934324‑M2/91‑44 (MQ=255)

                                                                           tttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCgg                 >  2:1422175/1‑91 (MQ=255)

                                                                            ttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggt                >  2:3697826/1‑91 (MQ=255)

                                                                            ttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggt                <  1:1039090/91‑1 (MQ=255)

                                                                             tAATACTGTAGTAAGAAGAGTCACAGTGTAATTATTGTGGCTTTGTTTATGGTGTGGTGTGATGTACTACTTTATTTGGGGGGTGGCggtg               <  2:1298693/91‑1 (MQ=255)

                                                                             tAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtg               <  1:1700494/91‑1 (MQ=255)

                                                                                tACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATTTTTTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtggtt            >  2:2147990/1‑90 (MQ=255)

                                                                                tACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTa            <  2:2752034/91‑1 (MQ=255)

                                                                                tACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTa            <  2:2418636/91‑1 (MQ=255)

                                                                                 aCTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTttactatagtattaaaatcaaaaatgtttaatagaagacattacatttc           <  2:1916137‑M2/91‑50 (MQ=255)

                                                                                  cTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATg          >  1:2851861/1‑91 (MQ=255)

                                                                                   tataGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATgg         <  1:1556649/91‑1 (MQ=255)

                                                                                    ataGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGt        <  1:3856982/91‑1 (MQ=255)

                                                                                    ataGTAACAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGt        <  2:3518238/91‑1 (MQ=255)

                                                                                     taGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGtt       <  1:523111/91‑1 (MQ=255)

                                                                                       gTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTTTGGCGGTGGTATGGTTTa     >  2:3578129/1‑91 (MQ=255)

                                                                                         aaGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTAcc   >  1:1347694/1‑91 (MQ=255)

                                                                                         aaGAAAAGTCACAGTGTAATCATTGTGGCTTTTCttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctac   <  2:2427364‑M2/91‑58 (MQ=255)

                                                                                          aaaaaagccacaatgattacactgtgacttttcaaactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacc  >  2:2882145‑M1/1‑1 (MQ=255)

GCTGACGAAGTAACATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCT  >  USA300TCH1516_ALE/511882‑512062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.