BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 511972	199 (0.980)	12 (0.060)	10/154	NT	6.2%	intergenic (+40/‑6723)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
*	?	USA300TCH1516_ALE	= 512004	174 (0.890)	12 (0.060)	10/154	NT	6.2%	intergenic (+72/‑6691)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase

Only 100 of 216 total aligned reads displayed.

AGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAA  >  USA300TCH1516_ALE/511914‑512094

   tAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTtta                                                                                         >  2:239356‑M2/1‑88 (MQ=255)

     gAACAGCAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtg                                                                                       >  1:3081984/1‑91 (MQ=255)

     gAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTCAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtg                                                                                       >  2:487828/1‑91 (MQ=255)

     gAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtg                                                                                       >  1:1298624/1‑91 (MQ=255)

     gAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtg                                                                                       >  1:2318156/1‑91 (MQ=255)

      aaCAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtgg                                                                                      <  1:3906991/91‑1 (MQ=255)

      aaCAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAAAACAAAAAAAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtgg                                                                                      <  2:3911503/91‑1 (MQ=255)

        cAGAAATGTAATGTCTTCTATTAAACATTTTTGTTTTTAATACTATAGTAAGAAAAGTCCCAGTGTAATCATTGTGGCTTTTTTTAtggtg                                                                                    <  1:3515540/91‑1 (MQ=255)

        cAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtg                                                                                    <  1:1103629/91‑1 (MQ=255)

        cAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtg                                                                                    <  2:2080156/91‑1 (MQ=255)

        cAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtg                                                                                    >  1:1443355/1‑91 (MQ=255)

         aGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgt                                                                                   <  1:2703627/91‑1 (MQ=255)

         aGAAATGTAATGTCTGCTATTAAACATTTTTGATTGTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgt                                                                                   <  2:2571781/91‑1 (MQ=255)

           aaaTGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtgg                                                                                 <  1:3280195/91‑1 (MQ=255)

             atgtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtggtg                                                                               >  1:2099208/1‑91 (MQ=255)

             atgtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtggtg                                                                               <  1:748406/91‑1 (MQ=255)

             atgtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTAtggtgtggtg                                                                               >  1:2325288/1‑91 (MQ=255)

               gtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGgtgtggtgtg                                                                             >  2:1544290/1‑91 (MQ=255)

               gtaatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGgtgtggtgtg                                                                             >  2:2333075/1‑91 (MQ=255)

                taatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGa                                                                            <  2:802770/91‑1 (MQ=255)

                taatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGa                                                                            <  1:795172/91‑1 (MQ=255)

                taatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGa                                                                            <  1:2139073/91‑1 (MQ=255)

                 aatgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGAt                                                                           <  2:1108491/91‑1 (MQ=255)

                  atgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATg                                                                          >  1:596262/1‑91 (MQ=255)

                  atgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATg                                                                          >  1:3012744/1‑91 (MQ=255)

                  atgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATg                                                                          <  1:2641114/91‑1 (MQ=255)

                   tgtCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGt                                                                         <  1:3225126/91‑1 (MQ=255)

                       ttctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGtacta                                                                     <  1:495409/91‑1 (MQ=255)

                        tctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGtactac                                                                    >  2:1302751/1‑91 (MQ=255)

                        tctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGtactac                                                                    <  1:2766868/91‑1 (MQ=255)

                        tctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGtactac                                                                    <  2:1501507/91‑1 (MQ=255)

                         ctATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTactact                                                                   <  1:3567813/91‑1 (MQ=255)

                           aTTAAACATTTTTTATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACttt                                                                 >  2:2987991/1‑91 (MQ=255)

                           aTTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACttt                                                                 >  1:335679/1‑91 (MQ=255)

                           aTTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACttt                                                                 <  2:1642556/91‑1 (MQ=255)

                           aTTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACttt                                                                 <  1:3841392/91‑1 (MQ=255)

                           aTTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACttt                                                                 >  1:2813142/1‑91 (MQ=255)

                           aTTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACttt                                                                 <  1:2183580/91‑1 (MQ=255)

                            ttAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTa                                                                >  2:1983325/1‑91 (MQ=255)

                              aaaCATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTAtt                                                              <  2:3732980/91‑1 (MQ=255)

                              aaaCATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTAtt                                                              >  1:2948823/1‑91 (MQ=255)

                               aaCATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTAttt                                                             <  2:929532/91‑1 (MQ=255)

                                aCATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTAtttt                                                            >  2:2826114/1‑90 (MQ=255)

                                 cATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGc                                                           >  2:1897916/1‑91 (MQ=255)

                                 cATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGc                                                           <  1:2671902/91‑1 (MQ=255)

                                  aTTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCg                                                          >  2:867132/1‑91 (MQ=255)

                                   tttttGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTGTATGGTGTGGTGTGATGTACTACTTTATTTGCgg                                                         <  2:1629176/91‑1 (MQ=255)

                                        gATTTTAATACTATAGTAAGAATAGTCACAGTGTAATCATTGTGGCTTTATTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTgg                                                    <  2:3006069/91‑1 (MQ=255)

                                        gATTTTAATACTATAGTAAGAACAGTCACAGTGTAATCATTGTGGCTTTCTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTgg                                                    <  2:3005493/91‑1 (MQ=255)

                                        gATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTgg                                                    <  2:2454737/91‑1 (MQ=255)

                                        gATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTgg                                                    <  2:268631/91‑1 (MQ=255)

                                        gATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTgg                                                    <  2:662238/91‑1 (MQ=255)

                                          ttttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCg                                                  <  2:686640/91‑1 (MQ=255)

                                          ttttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCg                                                  <  2:291741/91‑1 (MQ=255)

                                           tttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTttactatagtattaaaatcaaaaatgttaaatagaagacatta                                                 <  1:934324‑M2/91‑44 (MQ=255)

                                           tttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGTTGTGGCgg                                                 >  2:277877/1‑91 (MQ=255)

                                           tttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCgg                                                 <  2:1689404/91‑1 (MQ=255)

                                            ttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTTTTTGCGGTGTGGCggt                                                >  2:3947483/1‑91 (MQ=255)

                                            ttAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggt                                                <  1:1039090/91‑1 (MQ=255)

                                             tAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGTTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtg                                               >  2:2576628/1‑91 (MQ=255)

                                             tAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtg                                               <  1:1700494/91‑1 (MQ=255)

                                                tACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATTTTTTGGTGTGATGTACTACTTTATTTGCGGTGTGGCggtggtt                                            >  2:2147990/1‑90 (MQ=255)

                                                  cTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATg                                          >  1:2851861/1‑91 (MQ=255)

                                                   tataGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATgg                                         <  1:1556649/91‑1 (MQ=255)

                                                   tataGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATgg                                         >  2:924783/1‑91 (MQ=255)

                                                   tataGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATgg                                         >  1:526598/1‑91 (MQ=255)

                                                   tataGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATgg                                         <  2:2239984/91‑1 (MQ=255)

                                                      aGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGttt                                      >  1:2220477/1‑91 (MQ=255)

                                                       gTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTTTGGCGGTGGTATGGTTTa                                     >  2:3578129/1‑91 (MQ=255)

                                                         aaGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTAcc                                   >  1:2504631/1‑91 (MQ=255)

                                                         aaGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTAcc                                   >  1:1347694/1‑91 (MQ=255)

                                                         aaGAAAAGTCACAGTGTAATCATTGTGGCTTTTCttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctac                                   <  2:2427364‑M2/91‑58 (MQ=255)

                                                          aGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCt                                  <  2:122062/91‑1 (MQ=255)

                                                            aaaaGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAg                                >  2:640427/1‑91 (MQ=255)

                                                             aaaGTCATAGTGTTATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCGAGt                               <  2:3508541/91‑1 (MQ=255)

                                                             aaaGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGt                               <  1:3418086/91‑1 (MQ=255)

                                                              aaGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGtt                              >  1:1783636/1‑91 (MQ=255)

                                                                gTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTCTACCTAGcttt                            >  2:3225079/1‑91 (MQ=255)

                                                                gTCACAGTGTAATCATTGTGGCTTTTCttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgat                            <  2:3695091‑M2/91‑65 (MQ=255)

                                                                 tCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTa                           >  1:2443649/1‑91 (MQ=255)

                                                                 tCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTa                           >  2:1492450/1‑91 (MQ=255)

                                                                 tCACAGTGAAATCATTGTGGCTTTTCttactatagtattaaaatcaaaaatgtttaatagaagacattacatttctgttctacctgcgatt                           <  2:3388487‑M2/91‑66 (MQ=255)

                                                                   acaGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACt                         <  1:890386/91‑1 (MQ=255)

                                                                    caGTGTAATCATTGTGGCTTTTTTTTTTTTTTTGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTg                        >  2:30355/1‑91 (MQ=255)

                                                                      gtgtAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGG‑TTACCTAGTTTTACTGAgg                     <  2:3302903/91‑1 (MQ=255)

                                                                        gtAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAggg                    <  1:1884463/91‑1 (MQ=255)

                                                                        gtAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAggg                    <  2:1421998/91‑1 (MQ=255)

                                                                         tAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGa                   <  1:3109888/91‑1 (MQ=255)

                                                                         tAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGa                   >  2:2539724/1‑91 (MQ=255)

                                                                            tCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATgg                >  2:3782415/1‑91 (MQ=255)

                                                                            tCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATgg                >  2:607577/1‑91 (MQ=255)

                                                                             cATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATggg               <  2:2683076/91‑1 (MQ=255)

                                                                              cttGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGt              <  1:148012/90‑1 (MQ=255)

                                                                                  tgGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATc          <  2:2026805/91‑1 (MQ=255)

                                                                                     cTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCttt       <  1:2547637/91‑1 (MQ=255)

                                                                                      tttttttATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTa      <  1:1631785/91‑1 (MQ=255)

                                                                                       ttttttATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAg     <  2:440042/91‑1 (MQ=255)

                                                                                       ttttttATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAg     <  2:1881216/91‑1 (MQ=255)

                                                                                          tttATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGaa  <  1:2689601/91‑1 (MQ=255)

                                                                                          tttATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGaa  <  1:633277/91‑1 (MQ=255)

AGGTAGAACAGAAATGTAATGTCTTCTATTAAACATTTTTGATTTTAATACTATAGTAAGAAAAGTCACAGTGTAATCATTGTGGCTTTTTTTATGGTGTGGTGTGATGTACTACTTTATTTGCGGTGTGGCGGTGGTATGGTTTACCTAGTTTTACTGAGGGATGGGTAATCTTTAGGAA  >  USA300TCH1516_ALE/511914‑512094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.