| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 553211 = | 204 (1.000) | 14 (0.080) | 6/138 | NT | 8.4% | coding (182/477 nt) | folK | 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase |
| ? | USA300TCH1516_ALE | 553257 = | 130 (0.740) | coding (228/477 nt) | folK | 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase | |||||
TAAAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/553311‑553211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGAT > USA300TCH1516_ALE/553257‑553346 TAAAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGT < 2:447458/91‑1TAAAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGT < 2:3620429/91‑1TAAAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGT < 2:3620224/91‑1 AAAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTG < 2:2066023/91‑1 AAAGTGCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTG < 2:1548808/91‑1 AAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGT > 2:1863232/1‑91 AAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGT > 2:2751547/1‑91 AAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGT > 1:272797/1‑91 AAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGT > 1:861532/1‑91 AGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTT < 2:324575/91‑1 AGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTT > 1:225125/1‑91 GTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTG < 2:3349223/91‑1 GTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTG < 2:2606453/91‑1 GTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTG > 1:2578903/1‑91 GTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTG > 1:2321499/1‑91 GTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTG > 1:2320886/1‑91 GTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTG > 1:1931895/1‑91 TTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGT < 2:661634/91‑1 TTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGT < 1:3626684/91‑1 TTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGT < 2:719531/91‑1 TTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGT < 1:169385/91‑1 TTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGT < 1:805247/91‑1 TTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGT < 1:805023/91‑1 TCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTTCAACAGTTGTAATACTGTGAGTGTTGTT < 1:2943835/91‑1 CTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTT < 2:878460/91‑1 CTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTT < 1:987077/91‑1 CTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTT < 1:3322236/91‑1 CTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTT < 1:777726/91‑1 CTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTT < 1:1985974/91‑1 CTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTT < 1:1986394/91‑1 TAGGACCCCATTGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTG < 1:3578173/91‑1 TAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTG > 2:2538229/1‑91 TAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTG > 1:3310723/1‑91 TAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTG > 2:3310740/1‑91 TAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTG > 2:2066570/1‑91 AGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGA > 1:3564617/1‑91 AGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGA > 2:787413/1‑91 AGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGA < 1:3814733/91‑1 AGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGA > 1:3564434/1‑91 AGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGA < 1:25785/91‑1 GGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAA > 1:3397359/1‑91 TTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAAC > 2:3081345/1‑91 CAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAC > 1:1663860/1‑91 CAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAC > 1:762840/1‑91 CATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCCAGAACTTT > 1:518740/1‑91 CATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCCAGAACTTT > 1:518438/1‑91 CATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCCAGAACTTT > 1:518623/1‑91 CATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATATTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTT > 1:2261123/1‑91 CATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACACAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTT > 1:3417883/1‑91 CATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACACAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTT > 1:3417952/1‑91 ATTCCAACAGCTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTA > 2:3518723/1‑91 TTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAG > 1:2585230/1‑91 TTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAG > 1:634970/1‑91 TTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAG > 1:2373706/1‑91 AGTTGTAATACTGTGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGA > 1:222873/1‑91 TGTTGTTTGAAGACAGAAGAGTGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAG < 2:439053/91‑1 TGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAG < 1:943577/91‑1 TGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAG < 2:3925515/91‑1 TGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAG < 1:943001/91‑1 TGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAG < 1:2062203/91‑1 TGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAG < 1:2738151/91‑1 TGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAG < 1:2991906/91‑1 GTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGA < 1:893389/91‑1 TTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAA < 1:2976143/91‑1 TTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAA > 2:2836873/1‑91 TTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAA < 1:2507295/91‑1 TTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAA > 2:717661/1‑91 TTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAA > 1:1277044/1‑91 TGTTTGAAGACAGAAGAATGTTTACACCGTATTAGACAGGAACGCTGGGGTCCTAGAACTTTAGATGTGGATATTTTGTCGTATGGAGAAG > 2:2386155/1‑91 TGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAG > 1:1913804/1‑91 TGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAG > 2:2386389/1‑91 TGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAG > 1:3304531/1‑91 TTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAA < 1:422970/91‑1 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGTTGTGGATATTTTGTTGTATGGAGAAGAAA > 1:3156128/1‑91 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA < 1:1530352/91‑1 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA < 1:1530658/91‑1 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA > 2:3838744/1‑91 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA > 2:1185275/1‑91 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA > 2:1740761/1‑91 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA < 2:3284397/91‑1 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA < 2:3224987/91‑1 TTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAA > 1:3156307/1‑91 TGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAAT > 2:175288/1‑91 TGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAAT > 1:414378/1‑91 GAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATG < 2:1178426/91‑1 GAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATG < 1:3911000/91‑1 GAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATG < 1:3911842/91‑1 AAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGA < 1:2142591/91‑1 AAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGA > 2:2969124/1‑91 AAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGA < 2:2162001/91‑1 AGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGAT > 2:1871828/1‑91 AGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGAT < 1:206098/91‑1 TAAAGTTCTAGGACCCCATCGTTCCTTTCTAATACGGTGTAAACATTCTTCTGTCTTCAAACAACATTCCAACAGTTGTAATACTGTGAGTGTTGTTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/553311‑553211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGAT > USA300TCH1516_ALE/553257‑553346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |