BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	553211 =	204 (1.000)	14 (0.080)	6/138	NT	8.4%	coding (182/477 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase
*	?	USA300TCH1516_ALE	553257 =	130 (0.740)	14 (0.080)	6/138	NT	8.4%	coding (228/477 nt)	folK	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase

Only 100 of 256 total aligned reads displayed.

TGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATA  >  USA300TCH1516_ALE/553167‑553347

tGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAg                                                                                            <  2:170177/91‑1 (MQ=255)

 gggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGa                                                                                           >  1:2597464/1‑91 (MQ=255)

  ggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGAc                                                                                          >  2:2899006/1‑91 (MQ=255)

   gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACa                                                                                         >  2:1985448/1‑91 (MQ=255)

   gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACa                                                                                         >  2:1629782/1‑91 (MQ=255)

   gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACa                                                                                         <  2:3729175/91‑1 (MQ=255)

     ataCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACaga                                                                                       <  2:3223094/91‑1 (MQ=255)

       aCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaag                                                                                     <  2:2927343/91‑1 (MQ=255)

        cTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaaga                                                                                    <  2:2986962/91‑1 (MQ=255)

          gAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAAt                                                                                  <  2:863701/91‑1 (MQ=255)

            gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGt                                                                                <  1:3513448/91‑1 (MQ=255)

               aCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTa                                                                             >  1:3663320/1‑91 (MQ=255)

                 cTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTaca                                                                           >  1:2615676/1‑91 (MQ=255)

                  tAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTacac                                                                          >  1:1898079/1‑91 (MQ=255)

                  tAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTacac                                                                          <  1:804495/91‑1 (MQ=255)

                  tAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTacac                                                                          >  2:3955712/1‑91 (MQ=255)

                   aaCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACAcc                                                                         <  2:2419332/91‑1 (MQ=255)

                    aCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCg                                                                        <  2:2642213/91‑1 (MQ=255)

                     ttcttttAATGTGCGTGTTGAAATTCGAGCAACACTTACAGTATTACAACTGTTGGAATGTTGTGTCAAGACAGAAAAATGTTTACACCGt                                                                       <  2:3914352/88‑1 (MQ=255)

                         ttAAGTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTa                                                                   <  2:552729/91‑1 (MQ=255)

                         ttAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTa                                                                   <  2:925017/91‑1 (MQ=255)

                         ttAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTa                                                                   <  1:3489077/91‑1 (MQ=255)

                             aTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGaaa                                                               <  2:2164961/91‑1 (MQ=255)

                             aTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGaaa                                                               <  2:2747446/91‑1 (MQ=255)

                             aTTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGaaa                                                               >  2:3830321/1‑91 (MQ=255)

                               ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg                                                             >  2:1434816/1‑91 (MQ=255)

                               ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg                                                             >  2:3633715/1‑91 (MQ=255)

                                tgtgtgTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGa                                                            <  1:1376005/91‑1 (MQ=255)

                                  ttcttctgtcttcaaacaacattccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAAc                                                          >  2:3081345‑M2/57‑91 (MQ=255)

                                  tgtgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAAc                                                          >  1:2471261/1‑91 (MQ=255)

                                   gtgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACg                                                         >  1:684912/1‑91 (MQ=255)

                                    tgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGa                                                        <  1:956025/91‑1 (MQ=255)

                                     gtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACgcg                                                       <  1:2506569/91‑3 (MQ=255)

                                      ttGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATg                                                      >  2:711045/1‑91 (MQ=255)

                                         aaaTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATgggg                                                   <  2:1252878/91‑1 (MQ=255)

                                          aaTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGt                                                  <  1:2799307/91‑1 (MQ=255)

                                            TTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTcc                                                >  1:3397359‑M1/1‑91 (MQ=255)

                                             TCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCt                                               >  1:3564617‑M1/1‑91 (MQ=255)

                                              CAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTa                                              >  2:2538229‑M1/1‑91 (MQ=255)

                                              CAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTa                                              >  2:2066570‑M1/1‑91 (MQ=255)

                                               agacaacaCACACAGTAGTACGACTGCGGGAATGTGGTTGGAGGACAGGAGAGTGTTTGCACCGTATGAGAAAGGAACGATGGGGTCCGAg                                             <  2:2343311/89‑1 (MQ=255)

                                               AAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAg                                             <  2:878460‑M1/91‑1 (MQ=255)

                                               AAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAg                                             <  1:987077‑M1/91‑1 (MQ=255)

                                                 ACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGaa                                           <  1:169385‑M1/91‑1 (MQ=255)

                                                 ACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGaa                                           <  2:719531‑M1/91‑1 (MQ=255)

                                                  caacattccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAc                                          >  1:762840‑M2/41‑91 (MQ=255)

                                                  CAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAc                                          >  1:1931895‑M1/1‑91 (MQ=255)

                                                  CAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAc                                          >  1:2320886‑M1/1‑91 (MQ=255)

                                                  CAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAc                                          >  1:2578903‑M1/1‑91 (MQ=255)

                                                    ACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                        >  1:861532‑M1/1‑91 (MQ=255)

                                                    ACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                        >  1:272797‑M1/1‑91 (MQ=255)

                                                    ACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                        >  2:1863232‑M1/1‑91 (MQ=255)

                                                     cattccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCCAGAACttt                                       >  1:518740‑M2/38‑91 (MQ=255)

                                                     cattccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATATTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACttt                                       >  1:2261123‑M2/38‑91 (MQ=255)

                                                      ACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTa                                      <  2:3620429‑M1/91‑1 (MQ=255)

                                                       ttccaacagttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAg                                     >  1:2373706‑M2/36‑91 (MQ=255)

                                                        tCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGa                                    >  1:2570119/1‑91 (MQ=255)

                                                         cacaGTATTACACCTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAt                                   >  1:3029224/1‑91 (MQ=255)

                                                          acaGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtg                                  <  1:3854788/91‑1 (MQ=255)

                                                          acaGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtg                                  <  1:1160855/91‑1 (MQ=255)

                                                          acaGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtg                                  <  1:883462/91‑1 (MQ=255)

                                                            aGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtgtg                                <  1:1206839/91‑1 (MQ=255)

                                                            aGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtgtg                                <  1:1794640/91‑1 (MQ=255)

                                                            aGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAtgtg                                <  1:2868286/91‑1 (MQ=255)

                                                              tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              <  2:490692/91‑1 (MQ=255)

                                                              tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              <  1:3602625/91‑1 (MQ=255)

                                                              tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              <  2:3381901/91‑1 (MQ=255)

                                                              tATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              <  2:1540033/91‑1 (MQ=255)

                                                              agttgtaatactgtgagtgttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                              >  1:222873‑M2/29‑91 (MQ=255)

                                                               aTTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGat                             >  1:1494775/1‑91 (MQ=255)

                                                                 tACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGatat                           >  2:1966412/1‑91 (MQ=255)

                                                                  aCAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtt                          >  1:2683787/1‑91 (MQ=255)

                                                                  aCAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAtt                          <  1:2238364/91‑1 (MQ=255)

                                                                   cAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATAttt                         >  2:2711552/1‑91 (MQ=255)

                                                                     aCTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttg                       >  2:1892906/1‑91 (MQ=255)

                                                                     aCTGGTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttg                       <  1:144101/91‑1 (MQ=255)

                                                                      cTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttgt                      >  1:3481466/1‑91 (MQ=255)

                                                                       tGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttgtt                     >  2:3244937/1‑91 (MQ=255)

                                                                       tGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttgtt                     <  2:3534657/91‑1 (MQ=255)

                                                                            gAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATg                <  2:1300767/91‑1 (MQ=255)

                                                                             aaTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATgg               >  2:2593353/1‑91 (MQ=255)

                                                                              aTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGga              >  1:3052670/1‑91 (MQ=255)

                                                                               tgttgtttgaaGACAGAAGAGTGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGgag             <  2:439053‑M2/80‑1 (MQ=255)

                                                                                gttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGgaga            <  1:893389‑M2/81‑1 (MQ=255)

                                                                                 ttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa           >  2:2836873‑M2/10‑91 (MQ=255)

                                                                                 ttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa           <  1:2976143‑M2/82‑1 (MQ=255)

                                                                                 ttgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa           >  1:1277044‑M2/10‑91 (MQ=255)

                                                                                  tgtttgaaGACAGAAGAATGTTTACACCGTATTAGACAGGAACGCTGGGGTCCTAGAACTTTAGATGTGGATATTTTGTCGTATGGagaag          >  2:2386155‑M2/9‑91 (MQ=255)

                                                                                  tgtttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaag          >  1:3304531‑M2/9‑91 (MQ=255)

                                                                                    tttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAgaagaa        <  1:422970‑M2/85‑1 (MQ=255)

                                                                                     ttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGaaa       <  2:3284397‑M2/86‑1 (MQ=255)

                                                                                     ttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGaaa       >  2:1740761‑M2/6‑91 (MQ=255)

                                                                                     ttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGaaa       >  2:3838744‑M2/6‑91 (MQ=255)

                                                                                     ttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGaaa       <  1:1530658‑M2/86‑1 (MQ=255)

                                                                                     ttgaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGaaa       >  1:3156307‑M2/6‑91 (MQ=255)

                                                                                       gaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATg     <  2:1178426‑M2/88‑1 (MQ=255)

                                                                                       gaaGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATg     <  1:3911842‑M2/88‑1 (MQ=255)

                                                                                         aGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGAt   <  1:206098‑M2/90‑1 (MQ=255)

                                                                                          gACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATa  >  1:2041101/1‑91 (MQ=255)

                                                                                          gACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATa  >  2:1407871/1‑91 (MQ=255)

TGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATA  >  USA300TCH1516_ALE/553167‑553347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.