New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 553211 =204 (1.000)14 (0.080) 6/138 NT 8.4% coding (182/477 nt) folK 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase
?USA300TCH1516_ALE 553257 = 130 (0.740)coding (228/477 nt) folK 2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase

Only 100 of 269 total aligned reads displayed.

GTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCC  >  USA300TCH1516_ALE/553121‑553301
                                                                                          |                                                                                          
atcatttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtct                                                                                            >  2:1871828‑M1/91‑91 (MQ=255)
 tcatttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtctt                                                                                           <  2:2162001‑M1/2‑1 (MQ=255)
 tcatttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtctt                                                                                           >  2:2969124‑M1/90‑91 (MQ=255)
  aTTAACGTCTCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACCGAGCAACCTAACGCTTTAAATTTGTGTGTTGAAATTc                                                                                          >  2:3528658/1‑91 (MQ=255)
    tttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCaa                                                                                        >  2:1740761‑M1/87‑91 (MQ=255)
    tttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCaa                                                                                        >  2:1185275‑M1/87‑91 (MQ=255)
    tttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCaa                                                                                        <  1:1530658‑M1/5‑1 (MQ=255)
    tttcttctccatacaacaaaatatccacaactaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCaa                                                                                        >  1:3156128‑M1/87‑91 (MQ=255)
    tAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCaa                                                                                        >  2:2259699/1‑91 (MQ=255)
     ttcttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCaaa                                                                                       <  1:422970‑M1/6‑1 (MQ=255)
     aaCGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCaaa                                                                                       <  1:2943296/91‑1 (MQ=255)
     aaCGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCaaa                                                                                       <  1:1797463/91‑1 (MQ=255)
      aCGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCaaat                                                                                      >  2:1478524/1‑90 (MQ=255)
       cttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAaaca                                                                                     >  1:3304531‑M1/84‑91 (MQ=255)
       cGTATCTAATATTTCTCCGATATATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAaaca                                                                                     >  2:3631561/1‑91 (MQ=255)
        ttctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAaacaa                                                                                    >  2:2836873‑M1/83‑91 (MQ=255)
          ctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAAacaaca                                                                                  <  1:943577‑M1/11‑1 (MQ=255)
          ctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAAacaaca                                                                                  <  1:2062203‑M1/11‑1 (MQ=255)
          ctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAAacaaca                                                                                  <  1:2991906‑M1/11‑1 (MQ=255)
          ctccatacaacaaaatatccacatctaaagttctaggaccccatcgttcctttctaatacggtgtaaacactcttctgtcTTCAAacaaca                                                                                  <  2:439053‑M1/11‑1 (MQ=255)
          aTCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAacaaca                                                                                  >  1:1805135/1‑91 (MQ=255)
          aTCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAacaaca                                                                                  <  1:2678640/91‑1 (MQ=255)
           tCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAacac                                                                                 <  2:3156409/91‑1 (MQ=255)
           tCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAacac                                                                                 <  2:2537769/91‑1 (MQ=255)
              aaTATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGGAATTCAAACAACACTca                                                                              <  2:1857642/91‑1 (MQ=255)
               atatTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTcac                                                                             >  2:2511204/1‑91 (MQ=255)
               atatTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTcac                                                                             >  2:2511820/1‑91 (MQ=255)
                tatTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTcaca                                                                            <  1:2732839/91‑1 (MQ=255)
                tatTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTATAAATGTGTGTGTTGAAATTCAAGCAACACTcaca                                                                            <  2:1463432/91‑1 (MQ=255)
                  tttCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGt                                                                          <  1:1744620/91‑1 (MQ=255)
                  tttCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGt                                                                          <  2:3328485/91‑1 (MQ=255)
                  tttCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGt                                                                          <  1:1878722/91‑1 (MQ=255)
                    tctcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTAt                                                                        >  1:1708213/1‑91 (MQ=255)
                     ctcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTAtt                                                                       <  2:3268204/91‑1 (MQ=255)
                     ctcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTAtt                                                                       <  1:359156/91‑1 (MQ=255)
                      tcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTa                                                                      >  1:1918108/1‑91 (MQ=255)
                      tcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTa                                                                      <  2:2627320/91‑1 (MQ=255)
                      tcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTa                                                                      <  2:2437491/91‑1 (MQ=255)
                       ccGATTTATGAAACAGCACCAGTTGGGTATACTGCGCAACCTAACTTTTGAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTAc                                                                     >  2:3470108/1‑91 (MQ=255)
                       ccGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTAc                                                                     >  1:2007818/1‑91 (MQ=255)
                          aTTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAAc                                                                  >  1:3187203/1‑91 (MQ=255)
                             tATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGt                                                               >  2:812860/1‑91 (MQ=255)
                             tATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGt                                                               <  2:502365/91‑1 (MQ=255)
                             tATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGt                                                               <  1:1231613/91‑1 (MQ=255)
                              aTGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGtt                                                              <  1:2241980/91‑1 (MQ=255)
                               tGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTg                                                             >  2:3050655/1‑91 (MQ=255)
                               tGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTg                                                             <  2:3238186/91‑1 (MQ=255)
                                gAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTgg                                                            >  2:3372587/1‑91 (MQ=255)
                                gAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTgg                                                            <  2:266145/91‑1 (MQ=255)
                                 aaaCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGa                                                           <  1:1071854/91‑1 (MQ=255)
                                 aaaCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGa                                                           >  1:131942/1‑91 (MQ=255)
                                 aaaCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGa                                                           <  2:545059/91‑1 (MQ=255)
                                   aCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAt                                                         >  2:812678/1‑91 (MQ=255)
                                   aCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACAATCACAGTATTACAACTGTTGGAAt                                                         <  1:1565535/91‑1 (MQ=255)
                                    aaagttctgggaccccatcgttcctttctaatacggtgtaaacattcttctgtcTTCAAACAACACTCACAGTATTACAACTGTTGGAAtg                                                        >  1:518623‑M1/55‑91 (MQ=255)
                                    aaagttctaggaccccatcgttcctttctaatacggtgtaaatattcttctgtcTTCAAACAACACTCACAGTATTACAACTGTTGGAAtg                                                        >  1:2261123‑M1/55‑91 (MQ=255)
                                     aGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAtgt                                                       <  2:2386182/91‑1 (MQ=255)
                                      gCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAtgtt                                                      >  1:1630732/1‑91 (MQ=255)
                                       cACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAtgttg                                                     >  1:3955559/1‑91 (MQ=255)
                                       cACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAtgttg                                                     >  1:2158528/1‑91 (MQ=255)
                                        aCCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAAtgttgt                                                    >  2:2008665/1‑91 (MQ=255)
                                         ccAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATgttgtt                                                   <  1:1132450/91‑1 (MQ=255)
                                         ccAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATgttgtt                                                   <  2:681553/91‑1 (MQ=255)
                                           aGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTg                                                 >  2:2193723/1‑91 (MQ=255)
                                           aGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTg                                                 <  1:3896535/91‑1 (MQ=255)
                                             ttGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGaa                                               <  1:569482/91‑1 (MQ=255)
                                              tGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAg                                              <  2:170177/91‑1 (MQ=255)
                                               gggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGTAATGTTGTTTGAAGa                                             <  2:2907417/91‑1 (MQ=255)
                                               gggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGa                                             <  2:941361/91‑1 (MQ=255)
                                               gggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGa                                             >  1:2596771/1‑91 (MQ=255)
                                                 gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACa                                           >  2:1985448/1‑91 (MQ=255)
                                                 gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACa                                           <  2:3729175/91‑1 (MQ=255)
                                                 gTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACa                                           >  2:1276202/1‑91 (MQ=255)
                                                   ataCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACaga                                         <  2:3223094/91‑1 (MQ=255)
                                                    taCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaa                                        <  2:3759632/91‑1 (MQ=255)
                                                    taCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaa                                        <  1:3508308/91‑1 (MQ=255)
                                                      cTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaaga                                      <  2:2986962/91‑1 (MQ=255)
                                                      cTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACagaaga                                      >  1:3764624/1‑91 (MQ=255)
                                                       tGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAgaagaa                                     <  2:904968/91‑1 (MQ=255)
                                                           cAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGtt                                 >  1:1365597/1‑91 (MQ=255)
                                                             aCCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTa                               >  1:3663320/1‑91 (MQ=255)
                                                               cTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTaca                             >  1:2615676/1‑91 (MQ=255)
                                                                tAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTacac                            <  1:804495/91‑1 (MQ=255)
                                                                tAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTacac                            >  2:3955712/1‑91 (MQ=255)
                                                                 aaCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACAcc                           >  2:3854788/1‑91 (MQ=255)
                                                                  aCTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCg                          <  1:1505074/91‑1 (MQ=255)
                                                                   ttcttttAATGTGCGTGTTGAAATTCGAGCAACACTTACAGTATTACAACTGTTGGAATGTTGTGTCAAGACAGAAAAATGTTTACACCGt                         <  2:3914352/88‑1 (MQ=255)
                                                                             ttGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg               >  1:3488636/1‑91 (MQ=255)
                                                                              tgtgtgTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGa              <  1:1376055/91‑1 (MQ=255)
                                                                                tgtgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAAc            >  1:869815/1‑91 (MQ=255)
                                                                                tgtgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAAc            >  1:2471261/1‑91 (MQ=255)
                                                                                 gtgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACg           >  1:684912/1‑91 (MQ=255)
                                                                                  tgtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACGGAAGAATGTTTACACCGTATTAGAAAGGAACGa          <  1:956116/91‑1 (MQ=255)
                                                                                   gtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACgcg         <  1:2506569/91‑3 (MQ=255)
                                                                                   gtTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGAt         <  2:3104325/91‑1 (MQ=255)
                                                                                     tGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATgg       <  1:2546191/91‑1 (MQ=255)
                                                                                       aaaTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACGGAAGAATGTTTACACCTTATTAGAAAGGAACGATgggg     <  2:1547619/91‑1 (MQ=255)
                                                                                       aaaTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATgggg     <  2:1252878/91‑1 (MQ=255)
                                                                                        aaTTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGt    <  1:2799307/91‑1 (MQ=255)
                                                                                          TTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTcc  >  1:3397359‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
GTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTCACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCC  >  USA300TCH1516_ALE/553121‑553301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.