| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 562451 = | 170 (0.830) | 7 (0.040) | 6/134 | NT | 5.3% | intergenic (+3664/+138) | USA300TCH1516_00505/gabR | tRNA‑Ile/HTH‑type transcriptional regulatory protein GabR |
| ? | USA300TCH1516_ALE | 562497 = | 110 (0.650) | intergenic (+3710/+92) | USA300TCH1516_00505/gabR | tRNA‑Ile/HTH‑type transcriptional regulatory protein GabR | |||||
TAGCTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/562553‑562451‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAG > USA300TCH1516_ALE/562497‑562586 TAGCTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGT > 1:1412980/1‑91 AGCTTGTCTATTGTATAATAATTAATTTCGTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTC > 2:3435243/1‑91 AGCTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTC < 1:1346603/91‑1 GCTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCT < 2:2187786/91‑1 CTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTT > 1:1910067/1‑91 CTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATGTTCAATTAGATACCGTCTT < 2:3217598/91‑1 TTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTA < 1:398217/91‑1 TTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTA > 2:1481891/1‑91 tggCTATTGTAGAATAATTAATTTCCGTTGTGGATTGCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAACGAGATACCGTCTGAC < 1:177461/88‑1 TGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTAC > 1:1422159/1‑91 TGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTAC < 1:2924345/91‑1 TGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTAC > 2:1523931/1‑91 TGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTAC < 2:1829768/91‑1 TGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTAC < 2:1831124/91‑1 TGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTAC < 2:498967/91‑1 TGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAACTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTAC < 2:3551940/91‑1 GTCTATTGTATAATAATTACTTTCCTTTTTGTATTTCAATAACGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACT > 2:764473/1‑91 GTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCCATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACT > 1:3339817/1‑91 GTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACT > 1:1012445/1‑91 GTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACT > 1:2114748/1‑91 TCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTTGATACCTTCTTACTG > 2:519794/1‑91 TCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTG < 2:699405/91‑1 TCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTG < 1:960581/91‑1 TCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTG < 1:1936616/91‑1 TCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTG > 2:1765060/1‑91 CTATGGTAGAATACTTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGGGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGC < 2:2838365/91‑1 TATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCT < 1:2019435/91‑1 TATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCAAATTCAATTAGCTACCGTCTTACTGCT > 2:3417459/1‑91 ATTGTATAATAATTAATTTCCTTTTTTTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTC > 2:2914159/1‑91 ATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTC > 2:2711130/1‑91 ATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTC < 1:744808/91‑1 ATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTC < 1:745039/91‑1 ATTGTATAATAATTAATTTCCTTTTTGTATTGCAATAAAGTATAGAAAAGAGCGGTAGGATCATTTTCAATTAGATACCGTCTTACTGCTC < 1:3159349/91‑1 ATTGTATAATAATTAATTTCCTTTTTGTATTGCAATAAAGTATAGAAAAGAGCGGTAGGATCATTTTCAATTAGATACCGTCTTACTGCTC < 1:3159657/91‑1 TTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCT < 1:1158631/91‑1 TTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCT < 1:2969955/91‑1 TTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCT > 1:2446243/1‑91 TGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTT < 1:2464292/91‑1 AAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATAC > 1:334994/1‑91 CAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGA > 2:2077022/1‑91 AGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGAC > 2:347958/1‑91 TAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAA > 2:1848239/1‑91 AGATCATTTTCAATTAGATACCGTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGC > 1:640060/1‑91 TCATTTTCAATTAGATACCGTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTAT > 1:867035/1‑91 TCATTTTCAATTAGATACCGTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTAT > 2:2209726/1‑91 tgagCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAA < 1:3057635/87‑1 TCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTT > 1:1877107/1‑91 TCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTT < 1:1800261/91‑1 CTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGCAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAGCACTAACTTT > 2:2613614/1‑91 CTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTT > 1:1004177/1‑91 CTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTT < 2:1976603/91‑1 TTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTT < 1:2270071/91‑1 TTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTT < 1:2270095/91‑1 TTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTT > 2:1427627/1‑91 TTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTT > 2:2991654/1‑91 TACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTA > 1:2154534/1‑91 TACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTA > 1:2154546/1‑91 TACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTA > 1:1035694/1‑91 ACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTAT > 2:3234770/1‑91 ACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTAT > 2:3234937/1‑91 ACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTAT > 2:3421663/1‑91 ACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTAT < 2:565974/91‑1 TGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCA < 2:1810888/91‑1 TGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACAAACTTTTATCA < 2:487619/91‑1 CTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAA > 2:3388617/1‑91 CTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAA > 2:2090829/1‑91 CTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGA < 1:108575/91‑1 CTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGA < 1:108558/91‑1 CTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGA < 1:1872305/91‑1 CTTTTATATACTTTAATGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGA < 2:1640812/91‑1 CTTTTACATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGA > 1:3073667/1‑91 TTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAA < 1:1208062/91‑1 TTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAG < 1:2844589/91‑1 TTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAG < 2:582470/91‑1 TAGCTTGTCTATTGTATAATAATTAATTTCCTTTTTGTATTTCAATAAAGTATATAAAAGAGCAGTAAGATCATTTTCAATTAGATACCGTCTTACTGCTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/562553‑562451‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAG > USA300TCH1516_ALE/562497‑562586 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |