BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	562451 =	170 (0.830)	7 (0.040)	6/134	NT	5.3%	intergenic (+3664/+138)	USA300TCH1516_00505/gabR	tRNA‑Ile/HTH‑type transcriptional regulatory protein GabR
*	?	USA300TCH1516_ALE	562497 =	110 (0.650)	7 (0.040)	6/134	NT	5.3%	intergenic (+3710/+92)	USA300TCH1516_00505/gabR	tRNA‑Ile/HTH‑type transcriptional regulatory protein GabR

Only 100 of 207 total aligned reads displayed.

ATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGT  >  USA300TCH1516_ALE/562407‑562587

aTTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCttt                                                                                            <  2:78916/91‑1 (MQ=255)

    aaaaTGATATCATCGAGAACAAGATATTGTATAAATAGAGATGAGCAGTACGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTtata                                                                                        <  2:1700492/91‑1 (MQ=37)

    aaaaTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTtata                                                                                        >  2:329956/1‑91 (MQ=255)

     aaaTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTtatat                                                                                       >  1:3942978/1‑91 (MQ=255)

     aaaTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTtatat                                                                                       >  1:9022/1‑91 (MQ=255)

     aaaTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTtatat                                                                                       >  2:1985922/1‑91 (MQ=255)

     aaaTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTtatat                                                                                       <  1:1717932/91‑1 (MQ=255)

       aTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATAc                                                                                     >  2:1086309/1‑91 (MQ=255)

       aTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATAc                                                                                     >  2:3858/1‑91 (MQ=255)

       aTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATAc                                                                                     <  2:441900/91‑1 (MQ=255)

       aTGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATAc                                                                                     >  2:2693810/1‑91 (MQ=255)

        tGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACt                                                                                    <  2:372156/91‑1 (MQ=255)

        tGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACt                                                                                    <  2:27977/91‑1 (MQ=255)

         gATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACtt                                                                                   >  1:845968/1‑91 (MQ=255)

            atcatcGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTAt                                                                                >  2:2216724/1‑91 (MQ=255)

              catcGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTg                                                                              >  1:1057257/1‑91 (MQ=255)

               atcGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGa                                                                             >  1:3750719/1‑91 (MQ=255)

               atcGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGa                                                                             >  2:1169812/1‑91 (MQ=255)

                tcGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGaa                                                                            >  1:2431817/1‑91 (MQ=255)

                 cGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGaaa                                                                           >  2:2352055/1‑91 (MQ=255)

                 cGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGaaa                                                                           >  2:1011281/1‑91 (MQ=255)

                 cGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGaaa                                                                           >  1:402763/1‑91 (MQ=255)

                  gAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAAt                                                                          <  1:1467809/91‑1 (MQ=255)

                     aaCGAAATATTGTAGAAATAGGGAAGAGCAGTAAGACGGTATCTAATTGAAAATGACCTTACTGCTCTTTTATATACTTTATTGGAATACa                                                                       <  2:1905949/91‑1 (MQ=38)

                      aCAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACaa                                                                      >  2:1962427/1‑91 (MQ=255)

                      aCAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTAACTGCTCTTTTATATACTTTATTGAAATACaa                                                                      <  2:654627/91‑1 (MQ=255)

                       cAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACaaa                                                                     <  2:1696382/91‑1 (MQ=255)

                         aaaTATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACaaaaa                                                                   >  1:2855288/1‑91 (MQ=255)

                         aaaTATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACaaaaa                                                                   >  2:3956340/1‑91 (MQ=255)

                          aaTATTGTATAAATAGAGAAGAGCAATAAGACGGTATCTAATTGAAAATGATCTTACTGCTAGTTTATATACTTTATTGAAATACAAAAAg                                                                  <  2:1197499/91‑1 (MQ=255)

                            tatTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGa                                                                >  2:3109358/1‑91 (MQ=255)

                             atTGTATGAATGGAGAAGGGCATTAAGACGGTATCTAATTGAAAATGATCTTACTGCGCTTTTATATACTTTATTGAAATACAAAAAGGaa                                                               <  2:2095329/91‑1 (MQ=255)

                             atTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGaa                                                               >  1:906360/1‑91 (MQ=255)

                              ttGTATAAATAGAGAAGCGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGaaa                                                              >  2:2507857/1‑91 (MQ=255)

                              ttGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGaaa                                                              <  2:3583529/91‑1 (MQ=255)

                                 tataAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAaatta                                                           >  1:3446654/1‑91 (MQ=255)

                                 tataAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAaatta                                                           <  1:3043435/91‑1 (MQ=255)

                                    aaaTAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAaattaatt                                                        >  2:1133932/1‑91 (MQ=255)

                                     aaTAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAattaatta                                                       <  2:3517534/91‑1 (MQ=255)

                                      aTAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAattat                                                      <  2:820265/91‑1 (MQ=255)

                                       tAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAattatt                                                     <  1:2964013/91‑1 (MQ=255)

                                          agaagaGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATtata                                                  >  1:3806306/1‑91 (MQ=255)

                                           gaagaGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATAc                                                 >  1:1341009/1‑91 (MQ=255)

                                           aaagagcagtaagatcattttcaattagataccgtcttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATAc                                                 >  1:334994‑M2/48‑91 (MQ=255)

                                            AAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACa                                                <  1:2464292‑M1/91‑1 (MQ=255)

                                             AGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACaa                                               <  1:1158631‑M1/91‑1 (MQ=255)

                                              GAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAAt                                              <  1:744808‑M1/91‑1 (MQ=255)

                                              GAGCAGTAAGACGGTATCTAATTGAAAATGATCCTACCGCTCTTTTCTATACTTTATTGCAATACAAAAAGGAAATTAATTATTATACAAt                                              <  1:3159349‑M1/91‑1 (MQ=255)

                                               AGCAGTAAGACGGTAGCTAATTGAATTTGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATa                                             >  2:3417459‑M1/1‑91 (MQ=255)

                                                 cagtaagatcattttcaattagataccgtcttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGa                                           >  2:2077022‑M2/42‑91 (MQ=255)

                                                 CAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGa                                           <  2:699405‑M1/91‑1 (MQ=255)

                                                 CAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGa                                           >  2:1765060‑M1/1‑91 (MQ=255)

                                                 CAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGa                                           <  1:960581‑M1/91‑1 (MQ=255)

                                                 CAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGa                                           <  1:1936616‑M1/91‑1 (MQ=255)

                                                 CAGTAAGAAGGTATCAAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGa                                           >  2:519794‑M1/1‑91 (MQ=255)

                                                  agtaagatcattttcaattagataccgtcttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGAc                                          >  2:347958‑M2/41‑91 (MQ=255)

                                                  AGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGAc                                          >  1:2114748‑M1/1‑91 (MQ=255)

                                                  AGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGAc                                          >  1:1012445‑M1/1‑91 (MQ=255)

                                                  AGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATGGAAATACAAAAAGGAAATTAATTATTATACAATAGAc                                          >  1:3339817‑M1/1‑91 (MQ=255)

                                                  AGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACGTTATTGAAATACAAAAAGGAAAGTAATTATTATACAATAGAc                                          >  2:764473‑M1/1‑91 (MQ=255)

                                                   GTCAGACGGTATCTCGTTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGCAATCCACAACGGAAATTAATTATTCTACAatagcca                                         <  1:177461‑M1/91‑4 (MQ=255)

                                                   GTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACa                                         <  2:1829768‑M1/91‑1 (MQ=255)

                                                   GTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACa                                         >  2:1523931‑M1/1‑91 (MQ=255)

                                                   GTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACa                                         <  2:498967‑M1/91‑1 (MQ=255)

                                                    taagatcattttcaattagataccgtcttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACaa                                        >  2:1848239‑M2/39‑91 (MQ=255)

                                                     AAGACGGTATCTAATTGAACATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAg                                       <  2:3217598‑M1/91‑1 (MQ=255)

                                                      AGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGc                                      <  2:2187786‑M1/91‑1 (MQ=255)

                                                       GACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCt                                     <  1:1346603‑M1/91‑1 (MQ=255)

                                                       GACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAACGAAATTAATTATTATACAATAGACAAGCt                                     >  2:3435243‑M1/1‑91 (MQ=255)

                                                         tcattttcaattagataccgtcttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTAt                                   >  2:2209726‑M2/34‑91 (MQ=255)

                                                         cGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTAt                                   <  1:2844655/91‑1 (MQ=255)

                                                           gTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTg                                 <  1:1368604/91‑1 (MQ=255)

                                                           gTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTg                                 <  1:608322/91‑1 (MQ=255)

                                                           gTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTg                                 <  1:545408/91‑1 (MQ=255)

                                                            tATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGc                                <  1:1245950/91‑1 (MQ=255)

                                                             aTCTAATTGAAAATGATCTTACGGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCa                               <  2:3188160/91‑1 (MQ=255)

                                                                 aaTTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAg                           >  1:2022962/1‑91 (MQ=255)

                                                                      aaaaTGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAaca                      <  2:2721490/91‑1 (MQ=255)

                                                                       aaaTGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAacac                     >  1:2784477/1‑91 (MQ=255)

                                                                       aaaCGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAacac                     <  1:3561382/91‑1 (MQ=255)

                                                                        aaTGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACt                    <  2:2618855/91‑1 (MQ=255)

                                                                        aaTGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACt                    <  1:220734/91‑1 (MQ=255)

                                                                          tgagcttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTaa                  <  1:3057635‑M2/75‑1 (MQ=255)

                                                                          tGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTaa                  >  2:1477114/1‑91 (MQ=255)

                                                                          tGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTaa                  <  1:2814521/91‑1 (MQ=255)

                                                                            aTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACt                <  2:2866418/91‑1 (MQ=255)

                                                                            aTCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACt                <  1:2013941/91‑1 (MQ=255)

                                                                              cttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACttt              >  1:1004177‑M2/13‑91 (MQ=255)

                                                                               ttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACtttt             <  1:2270095‑M2/80‑1 (MQ=255)

                                                                               ttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACtttt             >  2:1427627‑M2/12‑91 (MQ=255)

                                                                               ttactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACtttt             >  2:2991654‑M2/12‑91 (MQ=255)

                                                                                tactgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTa            >  1:2154546‑M2/11‑91 (MQ=255)

                                                                                 actgctcttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTAt           >  2:3234937‑M2/10‑91 (MQ=255)

                                                                                       cttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAaaga     <  1:108575‑M2/88‑1 (MQ=255)

                                                                                       cttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAaaga     <  1:1872305‑M2/88‑1 (MQ=255)

                                                                                       cttTTATATACTTTAATGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAaaga     <  2:1640812‑M2/88‑1 (MQ=255)

                                                                                       cttTTACATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAaaga     >  1:3073667‑M2/4‑91 (MQ=255)

                                                                                        ttTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAaagaa    <  1:1208062‑M2/89‑1 (MQ=255)

                                                                                         tTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAaagaag   <  2:582470‑M2/90‑1 (MQ=255)

                                                                                          ttATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAgt  >  1:1415707/1‑91 (MQ=255)

ATTTAAAATGATATCATCGAAAACAAAATATTGTATAAATAGAGAAGAGCAGTAAGACGGTATCTAATTGAAAATGATCTTACTGCTCTTTTATATACTTTATTGAAATACAAAAAGGAAATTAATTATTATACAATAGACAAGCTATTGCATAAGTAACACTAACTTTTATCAAAGAAGT  >  USA300TCH1516_ALE/562407‑562587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.