| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 587580 = | 155 (0.760) | 7 (0.040) | 5/144 | NT | 5.1% | coding (1484/3552 nt) | rpoB | DNA‑directed RNA polymerase subunit beta |
| ? | USA300TCH1516_ALE | 587615 = | 123 (0.670) | coding (1519/3552 nt) | rpoB | DNA‑directed RNA polymerase subunit beta | |||||
AATCAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/587677‑587580‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgttcacTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTGTA > USA300TCH1516_ALE/587615‑587704 AATCAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCA > 2:2848726/1‑91AATCAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCA < 1:1454159/91‑1 ATCAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCAC < 2:687902/91‑1 ATCAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCAC > 1:337665/1‑91 TCAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACG > 1:2047790/1‑91 TCAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACG > 2:454740/1‑91 TCAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACG < 2:709616/91‑1 CAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGT < 2:2659178/91‑1 CAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGT < 1:1013566/91‑1 CAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGT < 2:2658960/91‑1 ATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTC > 1:2264371/1‑91 ATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTC > 1:2264475/1‑91 ATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTC > 1:2264653/1‑91 ATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTC < 1:542065/91‑1 TCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCA > 2:1364890/1‑91 TCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCA > 1:1258512/1‑91 TCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCA > 2:1365423/1‑91 TCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCA < 2:1479208/91‑1 TCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCA < 2:1479592/91‑1 TCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCA > 1:844151/1‑91 TCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGCTCA > 2:857482/1‑91 CCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCAC < 2:2951878/91‑1 CCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCAC > 1:673527/1‑91 CCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCAC > 1:360862/1‑91 CCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCAC > 1:1480644/1‑91 GTGAACGTCACGTACTTCCATTTGAGCACGTTCACTACTCTCACTATGGCCGTATGTTTCCAATTGAAACACCTGAGGGACCAAACATTGG > 2:802107/1‑91 ACGTCACGTACTTCCATTTGAGCACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAACCATTGGATTG > 1:3008692/1‑91 CGTCACGTACTTCCATTTGAGCACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCGGAGGGACCAAACATTGGATTGA > 2:1575461/1‑91 TCACGTACTTCCATTTGAGCACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATT > 1:1808515/1‑91 ACGTACTTCCATTTGAGCACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAA > 1:96040/1‑91 ACGTACTTCCATTTGAGCACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAA > 1:96041/1‑91 ACGTACTTCCATGTGAGCACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAA > 1:3046004/1‑91 ACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGC > 1:2886198/1‑91 ACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGC < 1:2263381/91‑1 ACGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGC < 2:1109636/91‑1 ACGTACACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGC < 1:1006473/91‑1 CGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCA < 1:50392/91‑1 CGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCA < 2:1819497/91‑1 CGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCA < 1:3870668/91‑1 CGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCA < 1:3870654/91‑1 CGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCA < 1:2220158/91‑1 CGTTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCA < 1:1744836/91‑1 TTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACG < 2:105795/91‑1 TTCACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACG > 1:937033/1‑91 CACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTG > 2:3066312/1‑91 CACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTG < 2:905012/91‑1 CACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTG > 2:1433614/1‑91 ACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTGT < 2:2035384/91‑1 ACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTGT > 2:3827417/1‑91 ACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTGT < 2:2035114/91‑1 ACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTGT > 1:1562386/1‑91 ACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTGT > 1:1012318/1‑91 ACTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTGT > 1:1012300/1‑91 CTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTGTA < 2:3115418/91‑1 CTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTGTA > 2:3585734/1‑91 CTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTGTA > 1:1026929/1‑91 AATCAATCCAATGTTTGGTCCCTCAGGTGTTTCAATTGGACACATACGGCCATAGTGAGAGTAGTGAACGTCACGTACTTCCATTTGAGCACGTTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/587677‑587580‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgttcacTACTCTCACTATGGCCGTATGTGTCCAATTGAAACACCTGAGGGACCAAACATTGGATTGATTAACTCATTATCAAGTTATGCACGTGTA > USA300TCH1516_ALE/587615‑587704 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |