| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 630624 | 231 (1.130) | 20 (0.100) | 10/154 | NT | 7.9% | intergenic (+10/‑103) | hxlB/gph_1 | 3‑hexulose‑6‑phosphate isomerase/Phosphoglycolate phosphatase |
| ? | USA300TCH1516_ALE | = 630661 | 245 (1.250) | intergenic (+47/‑66) | hxlB/gph_1 | 3‑hexulose‑6‑phosphate isomerase/Phosphoglycolate phosphatase | |||||
TAGATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/630532‑630624‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTTATTTTATTCTAAATTAGCATGATTTTGTTGCATCGTTTGTTCCGTA < USA300TCH1516_ALE/630661‑630572 TAGATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGA > 1:2349453/1‑91 AGATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGAT > 1:1439225/1‑91 AGATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGAT > 2:232861/1‑91 AGATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGAT > 1:3470104/1‑91 AGATAGGGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGAT < 2:3354463/91‑1 GATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAACTCATGCTAATTTAGAATAAAATAAAGATA > 2:1356778/1‑91 GATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATA < 1:56679/91‑1 GATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATA < 2:540562/91‑1 GATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATA < 2:540561/91‑1 GATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATA < 1:56830/91‑1 ACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATTTCTGCCTAGGCA < 1:3402561/91‑1 TGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATTTCTGCCTAGGCATC < 2:670234/91‑1 TGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATTTCTGCCTAGGCATC < 2:2139309/91‑1 GAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATTTCTGCCTAGGCATCA < 2:1649582/91‑1 AATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATTTCTGCCTAGGCATCATA < 1:1533685/91‑1 ATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATC < 2:942804/91‑1 ATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATC < 1:3303848/91‑1 ATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATC < 1:1806811/91‑1 ATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATC < 2:3710088/91‑1 TTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATCGAC < 1:3090978/91‑1 TTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATCGAC < 2:872270/91‑1 TTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATCGAC < 1:435911/91‑1 TTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATCGAC < 1:2185553/91‑1 TACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATCGACT < 1:2934784/91‑1 TACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATCGACT < 1:2136838/91‑1 TACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATCGACT < 1:2136885/91‑1 AACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTT < 2:2075827/91‑1 ACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTT < 1:646380/91‑1 ACAAAAGATGCAACGAAATCATGCTAATTTAGAATAAAATAAAGATAATCAATAATATTTCTGCCTAGGCATCATATATTCGACTATCTTT < 2:1656386/91‑1 CAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTTATTTTATTCT > 1:1085334/1‑91 ATAATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTTATTTTATTCTAAATTAGCATGATTTTGTTGCATCGTTTGTTCCG > 2:3742013/1‑91 ATAATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTTATTTTATTCTAAATTAGCATGATTTTGTTGCATCGTTTGTTCCG > 2:3742344/1‑91 TAATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTTATTTTATTCTGAATTAGCATGATTTTGTTGCATCGTTTGTTCCGT > 1:2334516/1‑91 TAATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTTATTTTATTCTAAATTAGCATGATTTTGTTGCATCGTTTGTTCCGT > 1:2334132/1‑91 TAATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTTATTTTATTCTAAATTAGCATGATTTTGTTGCATCGTTTGTTCCGT > 1:3350682/1‑91 TAATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTTATTTTATTCTAAATTAGCATGATTTTGTTGCATCGTTTGTTCCGT > 1:2590662/1‑91 AATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTTATTTTATTCTAAATTAGCATGATTTTGTTGCATCGTTTGTTCCGTA > 1:332638/1‑91 AATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTTATTTTATTCTAAATTAGCATGATTTTGTTGCATCGTTTGTTCCGTA > 2:924816/1‑91 TAGATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/630532‑630624‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataATCGATAATATTTCTGCCTAGGCATCATATTATCGACTATCTTTATTTTATTCTAAATTAGCATGATTTTGTTGCATCGTTTGTTCCGTA < USA300TCH1516_ALE/630661‑630572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |