BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 630624	231 (1.130)	20 (0.100)	10/154	NT	7.9%	intergenic (+10/‑103)	hxlB/gph_1	3‑hexulose‑6‑phosphate isomerase/Phosphoglycolate phosphatase
*	?	USA300TCH1516_ALE	= 630661	245 (1.250)	20 (0.100)	10/154	NT	7.9%	intergenic (+47/‑66)	hxlB/gph_1	3‑hexulose‑6‑phosphate isomerase/Phosphoglycolate phosphatase

Only 100 of 300 total aligned reads displayed.

GATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCAATAATAAACGAATA  >  USA300TCH1516_ALE/630534‑630714

gATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAACTCATGCTAATTTAGAATAAAATAAAGATA                                                                                            >  2:1356778‑M1/1‑91 (MQ=255)

gATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATA                                                                                            <  1:56679‑M1/91‑1 (MQ=255)

 aTAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAg                                                                                           <  1:3622794/91‑1 (MQ=255)

 aTAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAg                                                                                           <  1:2999068/91‑1 (MQ=255)

     tgttgtAATTGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGa                                                                                       <  2:2110440/91‑1 (MQ=255)

      gttgtAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGat                                                                                      >  1:2093115/1‑91 (MQ=255)

          tAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGataata                                                                                  <  1:966087/91‑1 (MQ=255)

            aTGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATatg                                                                                >  2:2581770/1‑91 (MQ=255)

            aTGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATatg                                                                                <  2:1146323/91‑1 (MQ=255)

                 aTTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGcc                                                                           <  1:1506724/91‑1 (MQ=255)

                  ttGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCt                                                                          >  1:3028727/1‑91 (MQ=255)

                   tgatgaCTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTa                                                                         >  1:2710860/1‑91 (MQ=255)

                   tgatgaCTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTa                                                                         >  1:3306970/1‑91 (MQ=255)

                    gatgaCTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAg                                                                        <  2:255329/91‑1 (MQ=255)

                       gaCTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCa                                                                     <  1:2061914/91‑1 (MQ=255)

                       gaCTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCa                                                                     <  1:2425541/91‑1 (MQ=255)

                       gaCTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCa                                                                     >  2:2317285/1‑91 (MQ=255)

                        aCTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAGAGATAGTCGATAATATGATGCCTAGGCAg                                                                    <  2:3446986/91‑1 (MQ=255)

                        aCTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAg                                                                    <  2:3171484/91‑1 (MQ=255)

                         cTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGa                                                                   >  2:1183810/1‑91 (MQ=255)

                         cTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGa                                                                   >  1:1951520/1‑91 (MQ=255)

                         cTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGa                                                                   <  2:505134/91‑1 (MQ=255)

                         cTGAAATGAATATTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGa                                                                   <  1:3588359/91‑1 (MQ=255)

                          tGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAgtcgataatatttctgcctaggcatc                                                                  <  2:670234‑M1/91‑27 (MQ=255)

                            aaaTGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAat                                                                >  1:172116/1‑91 (MQ=255)

                              atgaatgTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAatat                                                              >  2:2732977/1‑91 (MQ=255)

                              atgaatgTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAatat                                                              >  1:1220471/1‑91 (MQ=255)

                                  atgTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAatcgataatatttctgcctaggcatcatattatc                                                          <  1:1806811‑M1/91‑35 (MQ=255)

                                  atgTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAatcgataatatttctgcctaggcatcatattatc                                                          <  2:942804‑M1/91‑35 (MQ=255)

                                   tgTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCg                                                         <  1:914659/91‑1 (MQ=255)

                                   tgTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCg                                                         >  2:2125273/1‑91 (MQ=255)

                                    gTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGa                                                        <  2:3317822/91‑1 (MQ=255)

                                    gTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGa                                                        <  2:1510957/91‑1 (MQ=255)

                                     ttACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAatcgataatatttctgcctaggcatcatattatcgac                                                       <  1:2185553‑M1/91‑38 (MQ=255)

                                     ttACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAatcgataatatttctgcctaggcatcatattatcgac                                                       <  1:435911‑M1/91‑38 (MQ=255)

                                     ttACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGat                                                       >  1:2540505/1‑91 (MQ=255)

                                     ttACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGat                                                       <  2:1728680/91‑1 (MQ=255)

                                      tACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAatcgataatatttctgcctaggcatcatattatcgact                                                      <  1:2934784‑M1/91‑39 (MQ=255)

                                       aCGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATta                                                     >  1:2590662‑M2/1‑89 (MQ=255)

                                       aCGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATta                                                     >  1:3350682‑M2/1‑89 (MQ=255)

                                       aCGGAACAAACGATGCAACAAAATCATGCTAATTCAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATta                                                     >  1:2334516‑M2/1‑89 (MQ=255)

                                        cGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATtat                                                    >  2:3742344‑M2/1‑88 (MQ=255)

                                          gAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTAttt                                                  <  1:142840/91‑1 (MQ=255)

                                            aCAAACGATGCAACAAAATCATGCTAATTTAGAATAACATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTAttttt                                                >  1:3340340/1‑91 (MQ=255)

                                             cAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTAtttttt                                               >  1:2649734/1‑91 (MQ=255)

                                             cAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTAtttttt                                               >  2:53168/1‑91 (MQ=255)

                                             cAAACGATGCAACAAAATCATGCTAATGTAGAATAAAATAAAGAGAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTAtttttt                                               <  1:1894998/91‑1 (MQ=255)

                                               aaCGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTttta                                             >  2:2020229/1‑91 (MQ=255)

                                               aaCGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTttta                                             >  1:801151/1‑91 (MQ=255)

                                                aCGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTtttat                                            >  1:619619/1‑91 (MQ=255)

                                                 cGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTtttatt                                           >  2:2903881/1‑91 (MQ=255)

                                                  gATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTtttattt                                          <  1:674042/91‑1 (MQ=255)

                                                  gATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATAGATTATTTTtttattt                                          >  2:3774374/1‑91 (MQ=255)

                                                   aTGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTtttattta                                         <  1:2872077/91‑1 (MQ=255)

                                                   aTGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTtttattta                                         <  2:3851932/91‑1 (MQ=255)

                                                   aTGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTtttattta                                         >  1:223427/1‑91 (MQ=255)

                                                     gCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTaaa                                       >  2:391151/1‑91 (MQ=255)

                                                        acaaAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAaataa                                    <  1:3289309/91‑1 (MQ=255)

                                                         caaAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAaataat                                   >  1:3746341/1‑91 (MQ=255)

                                                          aaaaTCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAataata                                  >  1:3664822/1‑91 (MQ=255)

                                                           aaaTCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTAACGATTATTTTGTTATTTAAAtaataa                                 >  2:3424583/1‑91 (MQ=255)

                                                            aaTCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATaaa                                <  2:1813514/91‑1 (MQ=255)

                                                               cATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATTTTATCGATTATTTTTTTATTTAAATAATAAATta                             >  2:215002/1‑91 (MQ=255)

                                                               cATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATta                             >  2:320022/1‑91 (MQ=255)

                                                               cATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATta                             >  2:2669601/1‑91 (MQ=255)

                                                                aTGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATtat                            >  2:1585117/1‑91 (MQ=255)

                                                                aTGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATtat                            >  1:1254962/1‑91 (MQ=255)

                                                                aTGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATtat                            >  1:768522/1‑91 (MQ=255)

                                                                aTGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATtat                            >  2:2198264/1‑91 (MQ=255)

                                                                aTGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATCATTTTTTTATTTAAATAATAAATtat                            >  1:2795303/1‑91 (MQ=255)

                                                                 tGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATtata                           <  2:3602415/91‑1 (MQ=255)

                                                                  gCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAg                          >  2:2825808/1‑91 (MQ=255)

                                                                  gCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAg                          >  1:1592411/1‑91 (MQ=255)

                                                                  gCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAg                          <  2:885449/91‑1 (MQ=255)

                                                                  gCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAg                          <  2:910533/91‑1 (MQ=255)

                                                                  gCTAATTTAAAATAAAATAAAAATAGTCGATAATATGATGGATAGGCAGATATATTATCGATTATTTTTTTATTTAAATAATAAATTATAg                          <  2:248458/91‑1 (MQ=255)

                                                                   cTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGt                         >  2:443307/1‑91 (MQ=255)

                                                                    tAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGta                        <  1:3281468/91‑1 (MQ=255)

                                                                         tAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTataata                   <  2:872181/91‑1 (MQ=255)

                                                                          aGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAatat                  >  2:2224924/1‑91 (MQ=255)

                                                                          aGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGACtatctttattttattctaaattagcatgattttgttg                  >  1:1085334‑M2/1‑54 (MQ=255)

                                                                           gAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATc                 >  2:3380875/1‑91 (MQ=255)

                                                                           gAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATc                 <  1:2137605/91‑1 (MQ=255)

                                                                            aataaaataaAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCa                >  1:2557563/1‑91 (MQ=255)

                                                                             ataaaataaaGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAatattat               >  2:806836/1‑88 (MQ=255)

                                                                             ataaaataaaGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCaa               >  1:3581788/1‑91 (MQ=255)

                                                                             ataaaataaaGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCaa               >  2:579502/1‑91 (MQ=255)

                                                                                  ataaaGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCAataata          >  1:309596/1‑91 (MQ=255)

                                                                                   taaaGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCAAtaataa         >  2:3695451/1‑91 (MQ=255)

                                                                                    aaaGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCAATAATaaa        <  1:1009986/91‑1 (MQ=255)

                                                                                    aaaGATAGTCGAATATATGATGCCTAGGCAGAAATATTATTGATtatctttattttattctaaattagcatgatttcgttgcatcttttgt        <  2:1656386‑M2/91‑48 (MQ=255)

                                                                                     aaGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCAATAATAAAc       >  1:1142509/1‑91 (MQ=255)

                                                                                     aaGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCAATAATAAAc       <  1:3944193/91‑1 (MQ=255)

                                                                                     aaGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAAGTATAGTATAATATCAATAATAAAc       <  2:1787130/91‑1 (MQ=255)

                                                                                      aGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCAATAATAAACg      <  2:2386594/91‑1 (MQ=255)

                                                                                      aGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCAATAATAAACg      <  1:3155421/91‑1 (MQ=255)

                                                                                        aTAatcgataatatttctgcctaggcatcatattatcgactatctttattttattctaaattagcatgattttgttgcatcgtttgttccg    >  2:3742013‑M1/1‑3 (MQ=255)

                                                                                         tAatcgataatatttctgcctaggcatcatattatcgactatctttattttattctaaattagcatgattttgttgcatcgtttgttccgt   >  1:2334132‑M1/1‑2 (MQ=255)

                                                                                         tAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCAATAATAAACGAAt   >  1:3887399/1‑91 (MQ=255)

                                                                                          aGTCGATAATATGATGCCTAGGCAGAAATATTATCGATtatctttattttattctaaattagcatgattttgttgcatcgtttgttccgta  <  1:2136838‑M2/91‑54 (MQ=255)

GATAGTGTTGTAATGGGATTGATGACTGAAATGAATGTTACGGAACAAACGATGCAACAAAATCATGCTAATTTAGAATAAAATAAAGATAGTCGATAATATGATGCCTAGGCAGAAATATTATCGATTATTTTTTTATTTAAATAATAAATTATAGTATAATATCAATAATAAACGAATA  >  USA300TCH1516_ALE/630534‑630714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.