| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 634596 | 178 (0.870) | 18 (0.100) | 13/146 | NT | 9.6% | coding (777/1377 nt) | yhfT | putative acyl‑‑CoA ligase YhfT |
| ? | USA300TCH1516_ALE | = 634622 | 177 (0.950) | coding (803/1377 nt) | yhfT | putative acyl‑‑CoA ligase YhfT | |||||
ATCATTATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/634500‑634596‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaatTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATTGGAT < USA300TCH1516_ALE/634622‑634534 ATCATTATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATA > 2:1378579/1‑91ATCATTATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATA < 2:1468271/91‑1ATCATTATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATA > 1:2181370/1‑91ATCATTATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATA > 1:2181442/1‑91ATCATTATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATA > 1:2447761/1‑91 CATTATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAA < 2:1985576/91‑1 TATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGCTAAAAAA > 2:3510897/1‑91 TATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAA > 2:2627840/1‑91 TATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAA > 2:2627707/1‑91 TATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAA > 1:3251327/1‑91 ATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAAT > 2:3387940/1‑91 ACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAA‑TCAATCAAATTTATG < 2:114282/91‑1 ATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAA‑TCAATCAAATTTATGTCA < 1:403036/91‑1 GAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAA‑TCAATCAAATTTATGTCATT < 2:3334611/91‑1 CATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAA‑TCAATCAAATTTATGTCATTTGC < 2:1994097/91‑1 CATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAA‑TCAAGCAAATTTATGTCATTTGC < 1:131330/91‑1 ATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAA‑TCAATCAAATTTATGTCATTTGCT < 2:2127235/91‑1 ATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAA‑TCAATCAAATTTATGTCATTTGCTTGATT < 1:965896/91‑1 CCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATTCAATCAAATTTATGTCATTTGCTTGATTT < 1:3931826/91‑1 CAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATGAAAAATTCAATCAAATTTATGTCATTTGCTTGATTTT < 2:1470508/91‑1 CAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATTCAATCAAATTTATGTCATTTGCTTGATTTT < 2:1470380/91‑1 AATGATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGAT‑AAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTT < 1:3062489/91‑1 AATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTT < 2:3555641/91‑1 AATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAA‑TCAATCAAATTTATGTCATTTGCTTGATTTTTT < 1:2024644/91‑1 ATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTT < 1:2487474/91‑1 TCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAGAAGATAAAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTA < 1:3140321/91‑1 ATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGAT‑AAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCT < 1:2410562/91‑1 TTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGAT‑AAAGATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTA < 2:1777037/91‑1 TTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGAT‑AAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTA < 2:1938667/91‑1 AAAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGAT < 1:3322734/91‑1 AAAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGAT > 1:3223936/1‑91 AAAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGAT < 2:1914019/91‑1 AAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATT > 1:636977/1‑91 AAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATT > 1:126115/1‑91 AAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATT > 2:3412597/1‑91 AAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATT < 1:1360972/91‑1 AAAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATT < 1:1570623/91‑1 AAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAACATGATTG > 2:3498964/1‑91 AAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATTG > 1:2889508/1‑91 AAAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATTG > 2:1215042/1‑91 AAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATTGG < 1:1532460/91‑1 AAATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATTGG < 1:1052573/91‑1 ATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATTGGAT > 2:2906095/1‑91 ATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATTGGAT > 2:2906157/1‑91 ATTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTCTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATTGGAT > 2:3257747/1‑91 ATCATTATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/634500‑634596‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaatTCAATCAAATTTATGTCATTTGCTTGATTTTTTATCTTTTTAAAAATAGAAGAATGCAGCTTATCTCCACTGCTAAAAAATGATTGGAT < USA300TCH1516_ALE/634622‑634534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |