BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 634596	178 (0.870)	18 (0.100)	13/146	NT	9.6%	coding (777/1377 nt)	yhfT	putative acyl‑‑CoA ligase YhfT
*	?	USA300TCH1516_ALE	= 634622	177 (0.950)	18 (0.100)	13/146	NT	9.6%	coding (803/1377 nt)	yhfT	putative acyl‑‑CoA ligase YhfT

Only 100 of 235 total aligned reads displayed.

CAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTATTTCCAAATGT  >  USA300TCH1516_ALE/634532‑634712

  atccaatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAGAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAat                                                                                          >  2:3257747‑M2/1‑89 (MQ=255)

  atccaatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAat                                                                                          >  2:2906157‑M2/1‑89 (MQ=255)

    ccaatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAattt                                                                                        <  1:1052573‑M2/91‑5 (MQ=255)

    ccaatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAattt                                                                                        <  1:1532460‑M2/91‑5 (MQ=255)

     caatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAatttt                                                                                       >  1:2889508‑M2/1‑86 (MQ=255)

      aatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAattttt                                                                                      >  2:3412597‑M2/1‑85 (MQ=255)

      aatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAattttt                                                                                      >  1:636977‑M2/1‑85 (MQ=255)

         cATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTgg                                                                                   >  2:2051388/1‑91 (MQ=255)

           ttttttAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTa                                                                                 >  2:1222043/1‑91 (MQ=255)

           ttttttAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTa                                                                                 >  1:333954/1‑91 (MQ=255)

           ttttttAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTa                                                                                 >  1:3021200/1‑91 (MQ=255)

              tttAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACAt                                                                              <  1:2217681/91‑1 (MQ=255)

              tttAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATAAAGCAAATGACATAAATTTGAGTGCATTTTTTGGTACAt                                                                              >  2:941894/1‑91 (MQ=255)

                   cAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGaa                                                                         >  1:1203970/1‑91 (MQ=255)

                     gTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAAc                                                                       <  1:3892468/91‑1 (MQ=255)

                       ggAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCa                                                                     >  2:2770682/1‑91 (MQ=255)

                        gagaTAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAg                                                                    <  1:312460/91‑1 (MQ=255)

                        gagaTAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAg                                                                    <  2:2862725/91‑1 (MQ=255)

                        gagaTAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAg                                                                    <  1:2892943/91‑1 (MQ=255)

                         agaTAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGACACCAGt                                                                   >  2:221266/1‑91 (MQ=255)

                         agaTAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGt                                                                   <  1:2236185/91‑1 (MQ=255)

                         agaTAAGCTGCATTCTTCTAGTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGt                                                                   <  2:49488/91‑1 (MQ=255)

                            tAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGtttt                                                                <  2:3508128/91‑1 (MQ=255)

                              aGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTAt                                                              >  2:1760842/1‑91 (MQ=255)

                              aGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTAt                                                              <  1:1247577/91‑1 (MQ=255)

                              aGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTAt                                                              >  2:1095134/1‑91 (MQ=255)

                                 tGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAg                                                           >  1:1879990/1‑91 (MQ=255)

                                 tGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAg                                                           <  2:3792321/91‑1 (MQ=255)

                                 tGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAg                                                           <  1:2320855/91‑1 (MQ=255)

                                 tGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAg                                                           >  2:1910574/1‑91 (MQ=255)

                                  gCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTTCATCGGAAACCAGTTTTATCAGc                                                          >  2:2304392/1‑91 (MQ=255)

                                   cATTCTTCTTTTTTTAAAAAGATAAAACATCAAGCAAATGACATAAATTTGATTGACTTTTTTGGTACATCGGAAACCAGTTTTATCAGCt                                                         >  2:244494/1‑91 (MQ=255)

                                   cATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCt                                                         <  2:3222661/91‑1 (MQ=255)

                                    aTTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTATATCAGCta                                                        >  1:3799215/1‑91 (MQ=255)

                                     ttcttcTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCtat                                                       <  1:2685706/91‑1 (MQ=255)

                                      tcttctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAA‑TTTTTGGTACATCGGAAACCAGTTTTATCAGCTATaa                                                     <  1:2879882/91‑1 (MQ=255)

                                       cttctATTTTTAAAAAGATAAAAAATCAAGCAAATGGCATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATaa                                                     <  2:3907646/91‑1 (MQ=255)

                                        ttctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAAc                                                    <  1:1013604/91‑1 (MQ=255)

                                         tctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACt                                                   >  2:2402714/1‑91 (MQ=255)

                                          ctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACtt                                                  >  2:18280/1‑91 (MQ=255)

                                          ctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACtt                                                  >  1:2102184/1‑91 (MQ=255)

                                          ctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACtt                                                  <  1:2343625/91‑1 (MQ=255)

                                              ttttAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCGGCTATAACTTGAAt                                              <  2:3474252/91‑1 (MQ=255)

                                               tttAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATc                                             <  2:222267/91‑1 (MQ=255)

                                                 tAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAatctttatctttttaaaaatagaagaatgcagcttatctccactgctaa                                           <  2:1777037‑M2/91‑50 (MQ=255)

                                                 tAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCag                                           >  2:1363766/1‑91 (MQ=255)

                                                   aaaaGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCagca                                         <  2:1465265/91‑1 (MQ=255)

                                                    aaaGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCagcaa                                        <  2:1543323/91‑1 (MQ=255)

                                                      aGATAAAAAATCAAGCAAATGACATAAATTTGATTGAatttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaat                                      <  1:2410562‑M2/91‑55 (MQ=255)

                                                      aGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCagcaagc                                      <  2:2551352/91‑1 (MQ=255)

                                                      aGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTAAATCGGAAACCAGTTTTATCAGCTATAACTTGAATCagcaagc                                      >  2:2835932/1‑91 (MQ=255)

                                                       gATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCagcaagca                                     <  1:1558409/91‑1 (MQ=255)

                                                       gATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCagcaagca                                     <  1:2782101/91‑1 (MQ=255)

                                                        aTAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCCGCTATAACTTGAATCAGCAAGCAc                                    >  2:1468451/1‑91 (MQ=255)

                                                        aTAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCAc                                    <  2:426892/91‑1 (MQ=255)

                                                        aTAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCAc                                    >  1:3309051/1‑91 (MQ=255)

                                                        aTAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCAc                                    >  1:342357/1‑91 (MQ=255)

                                                         tAAAAAATCAAGCAAATGACATAAATTTGATTGAattttttatcttcttaaaaatagaagaatgcagcttatctccactgctaaaaaatga                                   <  1:3140321‑M2/91‑58 (MQ=255)

                                                          aaaaaaTCAAGCGAATGACGTGAAGTTGATTGAATTTTGGGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCa                                  <  2:162024/91‑1 (MQ=255)

                                                          aaaaaaTCAAGCAAATGACATAAATTTGATTGAattttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaatgat                                  <  1:2487474‑M2/91‑59 (MQ=255)

                                                           aaaaaTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAg                                 >  1:2070215/1‑91 (MQ=255)

                                                            aaaaTCAAGCAAATGACATAAATTTGATTGAatttttcatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaatgattg                                <  2:1470508‑M2/91‑61 (MQ=255)

                                                            aaaaTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGt                                >  1:3529466/1‑91 (MQ=255)

                                                             aaaTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGtt                               >  2:3723656/1‑91 (MQ=255)

                                                             aaaTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGtt                               >  2:1402103/1‑91 (MQ=255)

                                                             aaaTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGtt                               >  1:2296898/1‑91 (MQ=255)

                                                             aaaTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGtt                               >  1:604325/1‑91 (MQ=255)

                                                             aaaTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGtt                               <  1:3183326/91‑1 (MQ=255)

                                                              aaTCAAGCAAATGACATAAATTTGATTGAttttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaatgattggat                              <  1:965896‑M2/91‑63 (MQ=255)

                                                              aaTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTg                              >  1:1114559/1‑91 (MQ=255)

                                                               aTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGa                             >  1:3061353/1‑91 (MQ=255)

                                                               aTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGa                             >  2:2349671/1‑91 (MQ=255)

                                                                tCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGaa                            >  1:3705082/1‑91 (MQ=255)

                                                                 cAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAAt                           <  1:839505/91‑1 (MQ=255)

                                                                   aGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCa                         >  1:2666596/1‑91 (MQ=255)

                                                                    gCAAATGACATAAATTTGCTTGAttttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaatgattggattgtatg                        <  1:131330‑M2/91‑69 (MQ=255)

                                                                    gCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGCAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAg                        <  2:3619293/91‑1 (MQ=255)

                                                                       aaTGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAg                     <  2:3317788/91‑1 (MQ=255)

                                                                       aaTGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAg                     <  2:622334/91‑1 (MQ=255)

                                                                       aaTGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAg                     >  1:2584506/1‑91 (MQ=255)

                                                                        aTGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAgg                    >  1:455444/1‑91 (MQ=255)

                                                                         tGACATAAATTTGATTGAttttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaatgattggattgtatgttcat                   <  1:403036‑M2/91‑74 (MQ=255)

                                                                         tGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGgt                   >  1:2131435/1‑91 (MQ=255)

                                                                          gACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGgtg                  <  1:3616816/91‑1 (MQ=255)

                                                                            cATAAATTTGATTGAttttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaatgattggattgtatgttcattgt                <  2:114282‑M2/91‑77 (MQ=255)

                                                                              tAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCt              <  1:617782/91‑1 (MQ=255)

                                                                              tAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCt              <  1:169053/91‑1 (MQ=255)

                                                                               aaaTTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTa             >  2:3637780/1‑91 (MQ=255)

                                                                                 aTTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTAtt           <  1:981642/91‑1 (MQ=255)

                                                                                 aTTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTAtt           <  2:868632/91‑1 (MQ=255)

                                                                                  tttGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTAttt          <  2:3140292/91‑1 (MQ=255)

                                                                                  tttGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTAttt          <  1:482482/91‑1 (MQ=255)

                                                                                  tttGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTAttt          <  2:1956722/91‑1 (MQ=255)

                                                                                  tttGATTGAATTGTTTGGTACATCGGAAACCAGTTTTAGCAGGTATAACTTGAAACAGCAAGAACGAGTTGAATCAGGACGTGAGCTAgtt          <  2:1956680/91‑1 (MQ=255)

                                                                                   ttgattgaATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTATTTc         <  2:3091796/91‑1 (MQ=255)

                                                                                     gattgaATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTATTTCCa       <  1:177839/91‑1 (MQ=255)

                                                                                      attgaATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTATTTCCaa      >  2:3762347/1‑91 (MQ=255)

                                                                                       ttgaATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTATTTCCaaa     <  1:1846709/91‑1 (MQ=255)

                                                                                         gaATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTATTTCCAAAtg   <  2:2207701/91‑1 (MQ=255)

                                                                                          aaTGTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTATTTCGAAAtgt  <  1:3069491/91‑1 (MQ=255)

CAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAATCAGTAGGTGTGCTATTTCCAAATGT  >  USA300TCH1516_ALE/634532‑634712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.