BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 634596	178 (0.870)	18 (0.100)	13/146	NT	9.6%	coding (777/1377 nt)	yhfT	putative acyl‑‑CoA ligase YhfT
*	?	USA300TCH1516_ALE	= 634622	177 (0.950)	18 (0.100)	13/146	NT	9.6%	coding (803/1377 nt)	yhfT	putative acyl‑‑CoA ligase YhfT

Only 100 of 276 total aligned reads displayed.

ATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAA  >  USA300TCH1516_ALE/634506‑634686

attGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAAT                                                                                            >  2:3387940‑M1/1‑91 (MQ=255)

 ttGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATc                                                                                           >  1:1779347/1‑91 (MQ=255)

  tGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCa                                                                                          <  1:2267650/91‑1 (MQ=255)

   gTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTTTTTTTATAAAAAATCaa                                                                                         >  2:3093639/1‑91 (MQ=255)

   gTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCaa                                                                                         >  1:2588880/1‑91 (MQ=255)

       gTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCaa                                                                                     >  1:1660428/1‑91 (MQ=255)

         ttACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAAt                                                                                   <  1:3763844/91‑1 (MQ=255)

          tACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATg                                                                                  >  1:2671929/1‑91 (MQ=255)

          tACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATg                                                                                  >  2:1086971/1‑91 (MQ=255)

           acaacaATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAATTATATTATTAATCAAGCAAATGa                                                                                 >  2:653169/1‑91 (MQ=255)

           acaacaATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGa                                                                                 <  2:1929239/91‑1 (MQ=255)

               caaTGAACATACAATCCAATCATTTTTTAGCAGTGGAGAAAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATa                                                                             <  2:2888973/91‑1 (MQ=255)

                aaTGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATaa                                                                            >  1:415567/1‑91 (MQ=255)

                aaTGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATaa                                                                            >  2:2186149/1‑91 (MQ=255)

                aaTGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATaa                                                                            >  2:3700496/1‑91 (MQ=255)

                  tGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAAt                                                                          >  2:555769/1‑91 (MQ=255)

                     aCATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATttg                                                                       <  1:3290514/91‑1 (MQ=255)

                      cATACACTCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATttga                                                                      >  1:3078926/1‑91 (MQ=255)

                      cATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAAcaatcaaatttatgtcatttgc                                                                       <  2:1994097‑M1/91‑23 (MQ=255)

                      cATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAAcaagcaaatttatgtcatttgc                                                                       <  1:131330‑M1/91‑23 (MQ=255)

                      cATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATttga                                                                      >  1:3698320/1‑91 (MQ=255)

                       aTACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATttgat                                                                     <  1:2943534/91‑1 (MQ=255)

                       aTACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATttgat                                                                     <  2:1176168/91‑1 (MQ=255)

                       aTACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATttgat                                                                     <  1:2330848/91‑1 (MQ=255)

                        tACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATttgatt                                                                    >  2:3809907/1‑91 (MQ=255)

                         aCAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATttgattg                                                                   <  2:1337477/91‑1 (MQ=255)

                         aCAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATttgattg                                                                   >  1:3844979/1‑91 (MQ=255)

                          caatccaatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATttgattga                                                                  <  1:523332/91‑1 (MQ=255)

                            atccaatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAAcaatcaaatttatgtcatttgcttgatt                                                                 <  1:965896‑M1/91‑29 (MQ=255)

                              ccaatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAattt                                                              <  1:1532460‑M2/91‑5 (MQ=255)

                               caatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATGAAAAATtcaatcaaatttatgtcatttgcttgatttt                                                             <  2:1470508‑M1/91‑32 (MQ=255)

                               caatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAatttt                                                             >  2:1215042‑M2/1‑86 (MQ=255)

                               caatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAatttt                                                             >  1:2889508‑M2/1‑86 (MQ=255)

                               caatcATGTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAatttt                                                             >  2:3498964‑M2/1‑86 (MQ=255)

                                aatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAAcaatcaaatttatgtcatttgcttgatttttt                                                             <  1:2024644‑M1/91‑33 (MQ=255)

                                aatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATtcaatcaaatttatgtcatttgcttgattttt                                                            <  2:3555641‑M1/91‑33 (MQ=255)

                                aatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAattttt                                                            <  1:1360972‑M2/91‑7 (MQ=255)

                                aatcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAattttt                                                            >  1:636977‑M2/1‑85 (MQ=255)

                                 atcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATtcaatcaaatttatgtcatttgcttgatttttt                                                           <  1:2487474‑M1/91‑34 (MQ=255)

                                 atcATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAatttttt                                                           <  1:3322734‑M2/91‑8 (MQ=255)

                                   cATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTgg                                                         >  2:2051388/1‑91 (MQ=255)

                                   cATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTgg                                                         >  1:2880609/1‑91 (MQ=255)

                                     ttttttAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTa                                                       >  1:3021200/1‑91 (MQ=255)

                                        tttAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACAt                                                    <  1:2217856/91‑1 (MQ=255)

                                          tAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCCAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCg                                                  <  2:3664818/91‑1 (MQ=255)

                                          tAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCg                                                  <  2:1018125/91‑1 (MQ=255)

                                             cAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGaa                                               >  1:1203970/1‑91 (MQ=255)

                                               gTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAAc                                             <  1:2138518/91‑1 (MQ=255)

                                                  gagaTAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAg                                          <  2:2862725/91‑1 (MQ=255)

                                                  gagaTAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAg                                          <  1:3634169/91‑1 (MQ=255)

                                                   agaTAAGCTGCATTCTTCTAGTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGt                                         <  2:49488/91‑1 (MQ=255)

                                                     aTAAGCTGCATTCTTCTATTCTTAAAAAGATAAAAAATCAAGCAAATGACATCAATTTGATTGAATTGTTTGGTACATCGGAAACCAGttt                                       >  2:939174/1‑91 (MQ=255)

                                                        aGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTAt                                    >  2:1760842/1‑91 (MQ=255)

                                                          cTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCa                                  <  1:2355924/91‑1 (MQ=255)

                                                           tGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAg                                 >  2:1910574/1‑91 (MQ=255)

                                                           tGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAg                                 >  2:1536400/1‑91 (MQ=255)

                                                            gCATTCTTCTATTCTTAAAAAGATAAAAAATCAAGCAACTGACATAAATTTGATTGACTTTTTTGGTACATCGGAAACCAGTTTTATCAGc                                >  2:241817/1‑91 (MQ=255)

                                                             cATTCTTCTTTTTTTAAAAAGATAAAACATCAAGCAAATGACATAAATTTGATTGACTTTTTTGGTACATCGGAAACCAGTTTTATCAGCt                               >  2:244494/1‑91 (MQ=255)

                                                             cATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCt                               <  1:2298903/91‑1 (MQ=255)

                                                             cATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCt                               >  2:1416406/1‑91 (MQ=255)

                                                               ttcttcTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCtat                             <  1:3186647/91‑1 (MQ=255)

                                                                 cttctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATaa                           >  1:3183276/1‑91 (MQ=255)

                                                                 cttctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATaa                           <  1:2988287/91‑1 (MQ=255)

                                                                  ttctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAAc                          <  1:1013604/91‑1 (MQ=255)

                                                                  ttctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAAc                          <  2:1135604/91‑1 (MQ=255)

                                                                  ttctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCGATAAc                          >  2:3636272/1‑91 (MQ=255)

                                                                   tctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTTTAACt                         >  2:3208330/1‑91 (MQ=255)

                                                                   tctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACt                         <  1:3527155/91‑1 (MQ=255)

                                                                    ctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACtt                        >  2:18280/1‑91 (MQ=255)

                                                                    ctATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACtt                        >  1:2102184/1‑91 (MQ=255)

                                                                      aTTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGa                      >  2:3293165/1‑91 (MQ=255)

                                                                      aTTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGa                      >  1:856724/1‑91 (MQ=255)

                                                                       tttttAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGaa                     <  2:1331730/91‑1 (MQ=255)

                                                                       tttttAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTATTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGaa                     >  2:3933763/1‑91 (MQ=255)

                                                                        ttttAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCGGCTATAACTTGAAt                    <  2:3474252/91‑1 (MQ=255)

                                                                         tttAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATc                   <  2:222267/91‑1 (MQ=255)

                                                                          ttAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAAGTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCa                  <  1:3139177/91‑1 (MQ=255)

                                                                           tAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAatctttatctttttaaaaatagaagaatgcagcttatctccactgctaa                 <  2:1777037‑M2/91‑50 (MQ=255)

                                                                           tAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCag                 >  2:1363766/1‑91 (MQ=255)

                                                                           tAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCag                 >  1:422418/1‑91 (MQ=255)

                                                                           tAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCag                 >  1:2716589/1‑91 (MQ=255)

                                                                           tAAAAAGATAAAAAATCAAGCAAATGACATAAATTCGATCTAGTTTTTTGGTCCATCGGAAACTAGTTTTCTCACCCATAACTTGAGTCag                 >  2:954907/1‑91 (MQ=255)

                                                                              aaaGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCagcaa              <  1:2865558/91‑1 (MQ=255)

                                                                                aGATAAAAAATCAAGCAAATGACATAAATTTGATTGAatttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaat            <  1:2410562‑M2/91‑55 (MQ=255)

                                                                                aGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCagcaagc            <  2:2551352/91‑1 (MQ=255)

                                                                                  aTAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCCGCTATAACTTGAATCAGCAAGCAc          >  2:1468451/1‑91 (MQ=255)

                                                                                  aTAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCAc          >  1:342357/1‑91 (MQ=255)

                                                                                   tAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGATTTATCAGCTATAACTTGAATCAGCAAGCAcc         >  2:3236936/1‑91 (MQ=255)

                                                                                    aaaaaaTCAAGCGAATGACGTGAAGTTGATTGAATTTTGGGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCa        <  2:162024/91‑1 (MQ=255)

                                                                                     aaaaaTtcaatcaaatttatgtcatttgcttgattttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaatgatt       >  1:126115‑M1/1‑6 (MQ=255)

                                                                                     aaaaaTtcaatcaaatttatgtcatttgcttgattttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaatgatt       <  1:1570623‑M1/91‑86 (MQ=255)

                                                                                       aaaTtcaatcaaatttatgtcatttgcttgattttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaatgattgg     <  1:1052573‑M1/91‑88 (MQ=255)

                                                                                       aaaTCAAGCAAATGACATAAATTTGATTGAattttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaatgattgg     <  1:3931826‑M2/91‑62 (MQ=255)

                                                                                       aaaTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGtt     >  1:604325/1‑91 (MQ=255)

                                                                                        aaTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTg    >  2:2832330/1‑91 (MQ=255)

                                                                                        aaTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTg    >  1:1114559/1‑91 (MQ=255)

                                                                                         aTtcaatcaaatttatgtcatttgcttgattttttatctttttaaaaatagaagaatgcagcttatctccactgctaaaaaatgattggat   >  2:2906157‑M1/1‑2 (MQ=255)

                                                                                         aTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGa   >  1:3061353/1‑91 (MQ=255)

                                                                                         aTCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGa   >  2:2349671/1‑91 (MQ=255)

                                                                                          tCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGaa  >  1:3705082/1‑91 (MQ=255)

ATTGTTAGTTTACAACAATGAACATACAATCCAATCATTTTTTAGCAGTGGAGATAAGCTGCATTCTTCTATTTTTAAAAAGATAAAAAATCAAGCAAATGACATAAATTTGATTGAATTTTTTGGTACATCGGAAACCAGTTTTATCAGCTATAACTTGAATCAGCAAGCACCAGTTGAA  >  USA300TCH1516_ALE/634506‑634686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.