| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 646665 | 171 (0.840) | 17 (0.100) | 9/140 | NT | 10.0% | intergenic (+19/‑568) | lipL/galK | Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase |
| ? | USA300TCH1516_ALE | = 646681 | 158 (0.890) | intergenic (+35/‑552) | lipL/galK | Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase | |||||
CAAGAAGAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/646566‑646665‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacagccccAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAAAATA < USA300TCH1516_ALE/646681‑646593 CAAGAAGAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTT > 1:2192381/1‑91 AGAAGAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAA > 1:2484652/1‑91 AGAAGAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAA > 2:317577/1‑91 AGAAGAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAA < 2:1669000/91‑1 GAAGAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAAC < 1:3930111/91‑1 AGAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAGTGATAGATCAAATGCAATAGTTAAATATTTAACAG < 2:3594329/91‑1 AGAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAG < 1:480351/91‑1 GAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGC < 2:3928467/91‑1 GAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGC < 2:3797528/91‑1 GAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGC > 1:1419701/1‑91 GAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGC < 1:2453372/91‑1 AATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCC > 1:3865748/1‑91 AATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCC > 2:2597796/1‑91 AATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCC > 2:2597848/1‑91 AATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCC > 1:1529532/1‑91 AATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCC > 1:1529419/1‑91 AATGGCAAAGATACGATACGTATTTTGATAAAATGATAGAACGAAACAAGACAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCC > 2:2597909/1‑91 ATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCC > 2:2373740/1‑91 ATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCC > 1:1136967/1‑91 ATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCC > 1:2683230/1‑91 TGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCC < 1:2773610/91‑1 TGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCC > 2:72464/1‑91 TGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCC > 1:3801510/1‑91 TACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAANATTTAACAGCCCCAAACGATAACTTGA < 1:3223818/91‑1 ACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAA < 2:2495745/91‑1 ACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAA < 2:2495731/91‑1 ACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAA < 1:3769316/91‑1 ACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAA < 2:2238998/91‑1 ACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAA < 2:1004533/91‑1 CGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAAA < 2:2259916/91‑1 CGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAAA < 1:607669/91‑1 TATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAAAGG < 1:2804600/91‑1 TATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAAAGG < 1:1537972/91‑1 TATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAAAGG < 1:3760113/91‑1 TATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAAAGG < 1:2474492/91‑1 ATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAAAGGG < 1:1619810/91‑1 TTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAAAGGGGCT < 1:2432971/91‑1 TGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAAAGGGGCTG < 1:561237/91‑1 ATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAAAGGGGCTGTT < 2:1790967/91‑1 AAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACT < 1:2190483/91‑1 TAATAGCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATTATTTTA < 1:3068642/91‑1 TAATAGCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATGATTTTA < 1:3068846/91‑1 TAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTA > 2:1688486/1‑91 TAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTA < 1:2088212/91‑1 TAACAGCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTA < 2:2851769/91‑1 ACAGCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATC > 1:732561/1‑91 AGCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAA > 1:3896662/1‑91 AGCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAA > 1:234916/1‑91 AGCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAA > 1:1211343/1‑91 AGCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAA > 1:118074/1‑91 GCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAAA < 2:1816884/91‑1 GCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAAA < 2:1815696/91‑1 GCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAAA < 1:2220838/91‑1 GCCCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAAA < 1:1027022/91‑1 CCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAAAAT < 1:362248/91‑1 CCCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAAAAT < 2:1216871/91‑1 CCAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAAAATA > 2:2590943/1‑91 CAAGAAGAATGGCAAAGATACGATACGTATTTTGATAAAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/646566‑646665‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacagccccAAACGATAACTTGAAAGGGGCTGTTAAATATTTAACTATTGCATTTGATCTATCATTTTCTTGTTTCTTTCAATCATTTTATCAAAATA < USA300TCH1516_ALE/646681‑646593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |