| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 650749 | 185 (0.910) | 18 (0.090) | 9/154 | NT | 9.3% | intergenic (+1/+51) | USA300HOU_RS03100/rclA | hypothetical protein/putative pyridine nucleotide‑disulfide oxidoreductase RclA |
| ? | USA300TCH1516_ALE | = 650786 | 173 (0.880) | intergenic (+38/+14) | USA300HOU_RS03100/rclA | hypothetical protein/putative pyridine nucleotide‑disulfide oxidoreductase RclA | |||||
TAAGAAAACGACATGAAGAACGTAAACGTCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/650657‑650749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTATTGTTGTGCTTTTCGCTTTTCTAATTTTTCTTTAAGCTTTCTATCTTGT < USA300TCH1516_ALE/650786‑650697 TAAGAAAACGACATGAAGAACGTAAACGTCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATA > 1:1121679/1‑91TAAGAAAACGACATGAAGAACGTAAACGTCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATA > 2:3632919/1‑91TAAGAAAACGACATGAAGAACGTAAACGTCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATA > 2:2153792/1‑91TAAGAAAACGACATGAAGAACGTAAACGTCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATA < 2:2065380/91‑1TAAGAAAACGACATGAAGAACGTAAACGTCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATA > 1:1121632/1‑91 AGAAAACGACATGAAGAACGTAAACGTCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAA > 1:144800/1‑91 AGAAAACGACATGAAGAACGTAAACGTCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAA > 2:3079628/1‑91 AGAAAACGACATGAAGAACGTAAACGTCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAA < 1:2677719/91‑1 TAAACGTCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAA < 1:693621/91‑1 TCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGGTGGCACGCATTGAATGATGC < 1:3393124/91‑1 AGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAATGATGCTGCCAT < 1:2363410/91‑1 AGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAATGATGCTGCCAT < 1:2363396/91‑1 GTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAGAGCACAACAATAAAGCCTGGTGGCACGCATTGAATGATGCTGCCATC < 1:1870588/91‑1 GTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGGTGGCACGCATTGAATGATGCTGCCATC < 2:71398/91‑1 TAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCA < 1:3309835/91‑1 AGAACAAGATAGAAAGCTTAAAGAAAAATTAGAGAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAG < 1:3245793/91‑1 AGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAG < 1:2611670/91‑1 AACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGC < 2:2774874/91‑1 CAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTT < 1:2688473/91‑1 CAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTT < 1:3522128/91‑1 CAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTT < 1:47534/91‑1 CAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTT < 1:47571/91‑1 CAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTT < 1:1484418/91‑1 GATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTAT < 1:2639436/91‑1 GATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTAT < 1:1257941/91‑1 GATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACATAAAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTAT < 1:2639238/91‑1 AAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTATTGTTGTGCTTTTCGCTTTTCTAATTTTTCTTTAAGCTTTCTATCTT > 1:1742290/1‑91 AAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTATTGTTGTGCTTTTCGCTTTTCTAATTTTTCTTTAAGCTTTCTATCTT > 2:381203/1‑91 AAAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTCATCGTTGTGCTTTTCGCTTTTCTCCTTTTTCTTTAAGCTTTCTATCTT > 2:2803723/1‑91 AAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTATTGTTGTGCTTTTCGCTTTTCTAATTTTTCTTTAAGCTTTCTATCTTG > 2:987024/1‑91 AAACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTATTGTTGTGCATTTCGCTTTTCTAATTTTTCTTTAAGCTTTCTATCTTG > 2:1730652/1‑91 AACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTATTGTTGTGCTTTTCGCTTTTCTAATTTTTCTTTAAGCTTTCTATCTTGT < 2:169040/91‑1 TAAGAAAACGACATGAAGAACGTAAACGTCGTAAAGTAGAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/650657‑650749‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaACCTGGTGGCACGCATTGAATGATGCTGCCATCAGGCTTTATTGTTGTGCTTTTCGCTTTTCTAATTTTTCTTTAAGCTTTCTATCTTGT < USA300TCH1516_ALE/650786‑650697 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |