BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 650749	185 (0.910)	18 (0.090)	9/154	NT	9.3%	intergenic (+1/+51)	USA300HOU_RS03100/rclA	hypothetical protein/putative pyridine nucleotide‑disulfide oxidoreductase RclA
*	?	USA300TCH1516_ALE	= 650786	173 (0.880)	18 (0.090)	9/154	NT	9.3%	intergenic (+38/+14)	USA300HOU_RS03100/rclA	hypothetical protein/putative pyridine nucleotide‑disulfide oxidoreductase RclA

Only 100 of 228 total aligned reads displayed.

AACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATATG  >  USA300TCH1516_ALE/650696‑650876

   aaGATAGAAAGCTTAAAGAAAAAGGAGAAAAGCGAAAAGCACAACGATGAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTttt                                                                                         >  2:2803723‑M2/1‑88 (MQ=255)

    aGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAATCACAACAATAAAGACTGATGGCAGCATCATTCAATGCGTGCCACCAGAttttt                                                                                        >  1:3670998/1‑91 (MQ=255)

         gAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGtt                                                                                   >  2:270621/1‑91 (MQ=255)

         gAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGtt                                                                                   <  1:568433/91‑1 (MQ=255)

         gAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGtt                                                                                   >  1:2396339/1‑91 (MQ=255)

         gAAAGCTTAAAGAAAAAGTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTGAATGCGTGCCACCAGGTTTTTATGtt                                                                                   <  2:2246523/91‑1 (MQ=255)

         caaaGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGtt                                                                                   >  1:3010325/2‑91 (MQ=255)

           aaGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGtttt                                                                                 >  1:1259569/1‑91 (MQ=255)

           aaGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGtttt                                                                                 >  2:2406011/1‑91 (MQ=255)

            aGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTg                                                                                >  1:184073/1‑91 (MQ=255)

             gCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGt                                                                               >  1:1558062/1‑91 (MQ=255)

             gCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGt                                                                               <  1:3446791/91‑1 (MQ=255)

              cTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTc                                                                              >  2:2261795/1‑91 (MQ=255)

                  aaGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGa                                                                          >  2:3587589/1‑91 (MQ=255)

                     aaaaaTTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAAt                                                                       <  1:1159785/91‑1 (MQ=255)

                      aaaaTTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAAtt                                                                      <  1:2005313/91‑1 (MQ=255)

                        aaTTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATtaa                                                                    <  1:508948/91‑1 (MQ=255)

                         aTTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATtaaa                                                                   <  1:8667/91‑1 (MQ=255)

                         aTTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATtaaa                                                                   >  2:150578/1‑91 (MQ=255)

                          ttAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATtaaat                                                                  >  1:1061432/1‑91 (MQ=255)

                            aGAAAAGCGAAAAGCACAACAATAACGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATtaaataa                                                                <  2:490155/91‑1 (MQ=255)

                            aGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATtaaataa                                                                >  1:2212198/1‑91 (MQ=255)

                             gaaaagcgaaaagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATtaaataaa                                                               >  2:458812/1‑91 (MQ=255)

                              aaaagcgaaaagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTGTTTATGTTTGGTCTAGAAATTaaataaat                                                              >  2:318176/1‑91 (MQ=255)

                                aagcgaaaagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCa                                                            >  2:2960638/1‑91 (MQ=255)

                                 agcgaaaagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAGATAAATCAt                                                           >  1:3779606/1‑91 (MQ=255)

                                 agcgaaaagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCAt                                                           >  2:2957663/1‑91 (MQ=255)

                                 agcgaaaagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCAt                                                           >  1:2843006/1‑91 (MQ=255)

                                   cgaaaagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTa                                                         <  2:1716086/91‑1 (MQ=255)

                                    gaaaagcACAACAGTAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTaa                                                        <  2:2491118/91‑1 (MQ=255)

                                    gaaaagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTaa                                                        <  2:3197449/91‑1 (MQ=255)

                                    gaaaagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTaa                                                        <  2:2365860/91‑1 (MQ=255)

                                     aaaagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTaaa                                                       <  2:1046350/91‑1 (MQ=255)

                                      aaagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAAt                                                      >  2:2899191/1‑91 (MQ=255)

                                       aagcACAACAATGAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATg                                                     <  1:716603/91‑1 (MQ=255)

                                       aagcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATg                                                     >  1:620781/1‑91 (MQ=255)

                                        agcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGa                                                    <  2:817854/91‑1 (MQ=255)

                                         gcACAACAATATAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGAt                                                   <  2:751857/91‑1 (MQ=255)

                                         gcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGAt                                                   >  1:1170216/1‑91 (MQ=255)

                                         gcACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGAt                                                   >  1:1335514/1‑91 (MQ=255)

                                            caacaaTAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCg                                                <  1:1472399/91‑1 (MQ=255)

                                             aacaaTAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCgg                                               >  2:3383783/1‑91 (MQ=255)

                                             aacaaTAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCgg                                               >  1:2156399/1‑91 (MQ=255)

                                              acaaTAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGc                                              >  1:2826825/1‑91 (MQ=255)

                                              acaaTAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGc                                              <  2:578260/91‑1 (MQ=255)

                                               caaTAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGcc                                             >  2:1756802/1‑91 (MQ=255)

                                                aaTAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCa                                            <  2:2701429/91‑1 (MQ=255)

                                                 aTAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTttttatgttgtgcttttcgcttttctaatttttctttaagctttctatc                                           <  1:2639238‑M2/91‑50 (MQ=255)

                                                   aaaGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCg                                         >  1:2698939/1‑91 (MQ=255)

                                                    aaGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTtttattgttgtgcttttcgcttttctaatttttctttaagctttctatcttg                                        <  1:47534‑M2/91‑53 (MQ=255)

                                                    aaGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTtttattgttgtgcttttcgcttttctaatttttctttaagctttctatcttg                                        <  1:1484418‑M2/91‑53 (MQ=255)

                                                    aaGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTtttattgttgtgcttttcgcttttctaatttttctttaagctttctatcttg                                        <  1:3522128‑M2/91‑53 (MQ=255)

                                                    aaGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGt                                        <  2:2192597/91‑1 (MQ=255)

                                                     aGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTa                                       >  1:172260/1‑91 (MQ=255)

                                                      gCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAg                                      >  2:863043/1‑91 (MQ=255)

                                                      gCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAg                                      >  1:1868754/1‑91 (MQ=255)

                                                      gCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAg                                      >  2:3412034/1‑91 (MQ=255)

                                                        cTGATGGCAGCATCATTCAATGCGTGCCACCAGGTtttattgttgtgcttttcgcttctctaatttttctttaagctttctatcttgttct                                    <  1:3245793‑M2/91‑57 (MQ=255)

                                                        cTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGa                                    <  2:948147/91‑1 (MQ=255)

                                                         tGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGAt                                   >  1:2913736/1‑91 (MQ=255)

                                                          gATGGCAGCATCATACAATGCGTGCCACCAGGTTTTTATGTTTTGCCTAGAAATTACATAAATCATTAAATGATTCGGCCATCGTAGGATg                                  >  2:1166702/1‑91 (MQ=255)

                                                           aTGGCAGCATCATTCAATGCGTGCCACCAGGTtttattgttgtgcttttcgcttttctaatttttctttaagctttctatcttgttctact                                 <  1:2363410‑M2/91‑60 (MQ=255)

                                                            tGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCg                                <  2:3119312/91‑1 (MQ=255)

                                                            tGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCg                                >  2:685555/1‑91 (MQ=255)

                                                             ggCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGt                               <  2:1626920/91‑1 (MQ=255)

                                                                agcaTCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGtata                            >  2:2083206/1‑91 (MQ=255)

                                                                agcaTCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGtata                            <  2:1839857/91‑1 (MQ=255)

                                                                 gcaTCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATaa                           <  2:3273092/91‑1 (MQ=255)

                                                                  catcatTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATaaa                          >  1:2673672/1‑91 (MQ=255)

                                                                   atcatTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAat                         <  2:2389457/91‑1 (MQ=255)

                                                                   atcatTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCAAGAAATTAGATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAat                         <  2:3047133/91‑1 (MQ=255)

                                                                     catTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAatat                       <  2:3829349/91‑1 (MQ=255)

                                                                       ttCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAAtatta                     >  1:943812/1‑91 (MQ=255)

                                                                          aaTGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTAtct                  <  1:2728018/91‑1 (MQ=255)

                                                                          aaTGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTAtct                  <  2:2700921/91‑1 (MQ=255)

                                                                           aTGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTAtctc                 >  1:3804999/1‑91 (MQ=255)

                                                                               gTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTaa             >  2:3607928/1‑91 (MQ=255)

                                                                                tGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAAt            >  1:579765/1‑91 (MQ=255)

                                                                                tGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAAt            <  2:2626385/91‑1 (MQ=255)

                                                                                tGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAAt            >  2:719780/1‑91 (MQ=255)

                                                                                 gCCACCAGGTTTTTATGTTTTGTCTAGAGATTAAATAAGTCAGTAAATGATTCTGCCATCGTAGGATGCGTATAAATATTATCTCGTAATa           <  2:1305607/91‑1 (MQ=255)

                                                                                 gCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATa           <  1:913594/91‑1 (MQ=255)

                                                                                 gCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATa           >  1:435592/1‑91 (MQ=255)

                                                                                 gCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATa           <  1:2597229/91‑1 (MQ=255)

                                                                                   caccaGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTCATACg         >  2:3173083/1‑91 (MQ=255)

                                                                                   caccaGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACg         >  1:3325476/1‑91 (MQ=255)

                                                                                   caccaGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACg         >  1:3836199/1‑91 (MQ=255)

                                                                                   caccaGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACg         >  1:2055061/1‑91 (MQ=255)

                                                                                     ccaGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGt       <  2:3787102/91‑1 (MQ=255)

                                                                                        ggTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGtata    <  1:3570925/91‑1 (MQ=255)

                                                                                        ggTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGtata    <  2:3339091/91‑1 (MQ=255)

                                                                                        ggTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGtata    >  2:2045933/1‑91 (MQ=255)

                                                                                        ggTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCACCGTAGGATGCGTATAAATATTATCTCGTAATACGGtata    >  2:2153002/1‑91 (MQ=255)

                                                                                         gTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGtatct   >  2:1422258/1‑89 (MQ=255)

                                                                                         gTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTatat   >  1:2421866/1‑91 (MQ=255)

                                                                                          tttttATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATATg  >  2:3910741/1‑91 (MQ=255)

                                                                                          tttttATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATATg  >  1:492448/1‑91 (MQ=255)

                                                                                          tttttATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATATg  <  2:2919084/91‑1 (MQ=255)

                                                                                          tttttATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATATg  <  2:1266205/91‑1 (MQ=255)

                                                                                          tttttATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATATg  >  2:2240115/1‑91 (MQ=255)

AACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAAAGCCTGATGGCAGCATCATTCAATGCGTGCCACCAGGTTTTTATGTTTTGTCTAGAAATTAAATAAATCATTAAATGATTCGGCCATCGTAGGATGCGTATAAATATTATCTCGTAATACGGTATATG  >  USA300TCH1516_ALE/650696‑650876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.