| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 671622 = | 115 (0.560) | 26 (0.140) | 8/146 | NT | 17.8% | intergenic (+247/‑141) | argS/nth_1 | Arginine‑‑tRNA ligase/Endonuclease III |
| ? | USA300TCH1516_ALE | = 2866877 | 136 (0.730) | intergenic (‑276/+177) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
CGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/671718‑671622‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgact‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATT < USA300TCH1516_ALE/2866877‑2866788 CGTAAAATTTATTTCGTCGTCCGACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGG < 2:3190530/91‑1CGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGG > 2:2098708/1‑91CGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATCTCTCTTTGTTGGGGCCCCGCCGGGA‑AGG < 2:3792571/91‑1 GTAAAATTTATTTCGTCGTCCCACCCCAACTGGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGT < 1:3841746/91‑1 TAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTT < 1:1379895/91‑1 TAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTT < 1:2427583/91‑1 TAAAAGTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTT < 2:1269218/91‑1 AAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTG < 2:49090/91‑1 AAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTG > 1:200895/1‑91 AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGA < 2:2430538/91‑1 AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGA > 1:2891847/1‑91 AATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGAC > 1:3162585/1‑91 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTCGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT > 2:3193607/1‑91 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT < 1:3231971/91‑1 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT > 1:552242/1‑91 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT > 1:386703/1‑91 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT < 2:1896210/91‑1 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT < 1:841555/91‑1 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT < 1:1435077/91‑1 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT > 1:1358080/1‑91 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT > 2:882419/1‑91 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATATCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT < 2:3339890/91‑1 CATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTA‑GAATTGAAAATGCGCTTGTAACAAGCT < 2:446976/91‑1 CATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTA‑GAATTGAAAATGCGCTTGTAACAAGCT < 1:1740473/91‑1 CATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTA‑GAATTGAAAATGCGCTTGTAACAAGCT < 1:1740472/91‑1 TTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTA‑GAATTGAAAATGCGCTTGTAACAAGCTTT < 1:2994038/91‑1 GTCTGTAGTAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGGAT‑TGAAAATGCGCTTGTAACAAGCTTTTT < 2:3439626/91‑1 GTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTA‑GAATTGAAAATGCGCTTGTAACAAGCTTTTT < 1:3205847/91‑1 GTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTA‑GAATTGAAAATGCGCTTGTAACAAGCTTTTT < 1:1761098/91‑1 GTAGAAATTGGGAATCCAATTACTCTGTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATT < 2:419596/91‑1 TAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTC < 2:2340602/91‑1 TAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTC < 1:562102/91‑1 TAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTC < 1:395161/91‑1 AGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCT < 1:3234700/91‑1 GAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTA < 2:863100/91‑1 GAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTA < 2:518622/91‑1 gAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAG < 2:1370004/90‑1 AATTGGGAATCCAATTTCTCTTTGTTGGGGCTCCGCCGGCA‑AGGGTGACT‑‑GAA‑TGAATATGCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 1:3152506/91‑1 AATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 1:1267260/91‑1 AATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 1:1925101/91‑1 AATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 2:855812/91‑1 AATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 2:3742832/91‑1 AATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 1:1923897/91‑1 AATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 1:1923910/91‑1 AATTGGGAATCCAATTTCTCTTTGTTGGGGCCACGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 1:1923920/91‑1 AATTGGGAATCCAATTTCTCTTCGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 2:807699/91‑1 TTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCA < 1:549875/91‑1 ATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTT < 1:1649343/91‑1 TTGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATA < 1:400564/91‑1 TGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATAT < 2:388466/91‑1 TGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATAT < 1:1150423/91‑1 TGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATAT < 2:1240243/91‑1 TGACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATAT < 2:1007599/91‑1 GACT‑‑GAA‑CGAAAGTGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAAGTTTGCGAAAATATC < 2:2193925/91‑1 GACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTTTTTTTTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATC > 2:1092099/1‑91 GACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCTTTTCTATTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATC > 2:2952717/1‑91 GACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCATTTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATC > 2:2666747/1‑91 GACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATC < 2:2455457/91‑1 GACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATC > 1:238336/1‑91 GACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATC < 2:1446523/91‑1 GACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATC > 1:396593/1‑91 GACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCATGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATC < 2:3245188/91‑1 ACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCCACCTGGCTGGGGTTGGACGACGAAATAAATTTTGCGCAAATATCA < 2:1682277/91‑1 ACT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCA < 1:1779584/91‑1 CT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCAT > 1:2034039/1‑91 CT‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCAT > 2:2295812/1‑91 T‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATT < 1:2122448/91‑1 CGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/671718‑671622‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgact‑‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATT < USA300TCH1516_ALE/2866877‑2866788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |