| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 671622 = | 115 (0.560) | 26 (0.140) | 8/146 | NT | 17.8% | intergenic (+247/‑141) | argS/nth_1 | Arginine‑‑tRNA ligase/Endonuclease III |
| ? | USA300TCH1516_ALE | = 2866877 | 136 (0.730) | intergenic (‑276/+177) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
Only 100 of 215 total aligned reads displayed.
AATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTT > USA300TCH1516_ALE/2866788‑2866967 | aaTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCa < 1:2122448‑M2/91‑2 (MQ=255) aTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCag > 2:2295812‑M2/1‑89 (MQ=255) tGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagt < 1:1779584‑M2/91‑4 (MQ=255) tGATATTTGCGCAAAATTTATTTCGTCGTCCAACCCCAGCCAGGTGGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagt < 2:1682277‑M2/91‑4 (MQ=255) gATATTTTCGCAAACTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCACTTTCG‑TTCagtc < 2:2193925‑M2/91‑5 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCATGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtc < 2:3245188‑M2/91‑5 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtc < 2:1446523‑M2/91‑5 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtc > 1:238336‑M2/1‑87 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAAATGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtc > 2:2666747‑M2/1‑87 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtc > 2:1092099‑M2/1‑87 (MQ=255) atatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtca < 1:1150423‑M2/91‑6 (MQ=255) atatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtca < 2:1240243‑M2/91‑6 (MQ=255) tatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtcaa < 1:400564‑M2/91‑7 (MQ=255) tagtttCGCAAAATTTATTTCGTCGTCCCACCCCAGTAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCaa < 2:3112453/88‑1 (MQ=255) ttttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAact > 1:1005907/1‑91 (MQ=255) tttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAacta > 1:1758866/1‑91 (MQ=255) tttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAacta > 2:3466271/1‑91 (MQ=255) tttCGCAAAATTTATTTCGTCGTCCCACCCCACCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTAAacta > 2:3880244/1‑91 (MQ=255) aaaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCaa < 2:1297711/91‑1 (MQ=39) tttCGTCGTCCCACCCGAGCAAGGTTGAGTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAGCTACTGCCAATATAACt < 2:1714503/91‑1 (MQ=255) tttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACt < 1:498168/91‑1 (MQ=255) tttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACt > 2:3643457/1‑91 (MQ=255) tttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACt < 1:1593710/91‑1 (MQ=255) ttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACtt > 1:487789/1‑91 (MQ=255) cgtcgtCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCg > 1:3828683/1‑91 (MQ=255) tcgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTa > 2:2743750/1‑91 (MQ=255) cgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTag < 2:1991656/91‑1 (MQ=255) cgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTag > 1:3440346/1‑91 (MQ=255) cgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTag < 2:1550550/91‑1 (MQ=255) cccACCCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCA‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGc > 1:941374/1‑91 (MQ=255) cccACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGc > 2:1510220/1‑91 (MQ=255) cccACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGc < 2:1245352/91‑1 (MQ=255) cccACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGc < 1:206658/91‑1 (MQ=255) cccACCCCAGCAAGGTTGACTAGAATTG‑AAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCa > 2:677540/1‑91 (MQ=255) ccACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TCCAGTCAACTACTGCCAATATAACTTCGTAGAGCa > 2:459797/1‑91 (MQ=255) ccccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAg > 2:1008017/1‑91 (MQ=255) cAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAAc < 1:1891058/91‑1 (MQ=40) aGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa > 1:1450726/1‑91 (MQ=39) aGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa > 1:2030199/1‑91 (MQ=39) gCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGCACAt > 2:279732/1‑91 (MQ=255) gCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAt < 1:2846417/91‑1 (MQ=38) cAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAtt > 1:3730573/1‑91 (MQ=37) cAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTAG‑TTCATTTAACTAATGCCAATATACCTTCGTAGAGCATAGAACGtt > 2:2976907/1‑91 (MQ=11) aaGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTg < 2:1167634/91‑1 (MQ=35) aaGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTg < 1:3302703/91‑1 (MQ=35) aaGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTg > 1:3020405/1‑91 (MQ=35) aGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGa > 1:73087/1‑91 (MQ=34) gTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAtt < 1:2790789/91‑1 (MQ=32) ttGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAttt > 2:2758216/1‑91 (MQ=31) tGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaa < 1:549875‑M2/91‑49 (MQ=255) aCTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtcaaccttgccggcggggccccaacgaagagaaattggattcccaatt < 2:807699‑M2/91‑51 (MQ=255) aCTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatt < 1:1923897‑M2/91‑51 (MQ=255) aCTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatt < 2:855812‑M2/91‑51 (MQ=255) aCTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatt < 2:3742832‑M2/91‑51 (MQ=255) aCTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatt < 1:1925101‑M2/91‑51 (MQ=255) aCTAGAATTGAAAAAAGCTTGTTACAAGCGCATATTCA‑TTCagtcacccttgccggcggagccccaacaaagagaaattggattcccaatt < 1:3152506‑M2/91‑51 (MQ=255) aCTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatt < 1:1267260‑M2/91‑51 (MQ=255) cTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaattc < 2:1370004‑M2/91‑52 (MQ=255) tAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTa < 2:3400426/91‑1 (MQ=31) tAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCG‑TTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttc < 2:518622‑M2/91‑53 (MQ=255) aaTTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCa > 1:838336/1‑91 (MQ=34) aaTTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCa < 2:2872991/91‑1 (MQ=34) aTTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAg < 1:1672347/91‑1 (MQ=34) ttGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGc < 1:299684/91‑1 (MQ=34) gAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCt < 2:2119147/91‑1 (MQ=34) aaaaaGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGa > 2:912768/1‑91 (MQ=33) aaaaaGCTTGTTACAAGCGCATTTTCAATTCtagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagac < 1:3205847‑M2/91‑61 (MQ=255) aaaaaGCTTGTTACAAGCGCATTTTCA‑ATCctagtcaaccttgccggcggggccccaacaaagagaaattggattcccaattactacagac < 2:3439626‑M2/91‑62 (MQ=255) aaaaGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGAt > 2:2634862/1‑91 (MQ=34) aaaGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATc < 1:1499756/91‑1 (MQ=34) aaaGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATc > 1:1942019/1‑91 (MQ=34) aaGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCa > 1:3043027/1‑91 (MQ=34) aGCTTGTTACAAGCGCATTTTCAATTCtagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatg < 1:1740473‑M2/91‑65 (MQ=255) gCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAAc < 2:3938767/91‑1 (MQ=37) gCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAAc > 1:3252645/1‑91 (MQ=37) tGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACata > 1:3457024/1‑91 (MQ=40) tGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACata > 1:565555/1‑91 (MQ=40) cAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaat < 2:2575496/91‑1 (MQ=255) cAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaat < 2:2647543/91‑1 (MQ=255) aaGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaata < 1:2289042/91‑1 (MQ=255) aaGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaata < 1:261267/91‑1 (MQ=255) aGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaatat < 2:1211197/91‑1 (MQ=255) aGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaatat < 2:1625405/91‑1 (MQ=255) gcgcATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaatata < 2:1128617/91‑1 (MQ=255) gcgcATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaatata < 2:3552360/91‑1 (MQ=255) cATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATataaatataaat > 1:847837/1‑91 (MQ=255) ttttCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttt > 1:511965/1‑91 (MQ=255) tttCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAtttt < 1:2462190/91‑1 (MQ=255) ttCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttttt < 2:1905689/91‑1 (MQ=255) ttCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttttt > 1:2327543/1‑91 (MQ=255) ttCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttttt > 1:806550/1‑91 (MQ=255) ttCG‑TTCAGTCAACTACTACCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttttt > 1:2776977/1‑91 (MQ=255) tCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTa < 2:2591276/91‑1 (MQ=255) cG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTAt > 1:1553995/1‑91 (MQ=255) ttCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGt > 1:3473304/1‑91 (MQ=255) tCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGtt > 1:756492/1‑91 (MQ=255) tCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATGTTTATGtt < 1:1791150/91‑1 (MQ=255) cAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGttt < 2:2436257/91‑1 (MQ=255) cAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGttt < 2:1055759/91‑1 (MQ=255) cAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGttt < 1:3947754/91‑1 (MQ=255) | AATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCG‑TTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTT > USA300TCH1516_ALE/2866788‑2866967 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |