| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 672540 = | 204 (1.000) | 19 (0.100) | 12/150 | NT | 8.9% | intergenic (+142/‑237) | nth_1/btuF | Endonuclease III/Vitamin B12‑binding protein |
| ? | USA300TCH1516_ALE | 672565 = | 198 (1.040) | intergenic (+167/‑212) | nth_1/btuF | Endonuclease III/Vitamin B12‑binding protein | |||||
CGTTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/672634‑672540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggggAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACA > USA300TCH1516_ALE/672565‑672654 CGTTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTA > 1:763500/1‑91CGTTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTA > 1:981616/1‑91CGTTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTA > 1:1741519/1‑91CGTTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTA > 1:3414859/1‑91CGTTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTA < 1:2259456/91‑1 GTTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAG > 1:2454413/1‑91 TTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGG < 2:2006241/91‑1 TTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGG < 1:347604/91‑1 TTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGG < 2:2006215/91‑1 TTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGG < 2:978350/91‑1 TCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGGG < 2:3696921/91‑1 TCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGGG < 1:3524226/91‑1 CCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGGGG > 1:2409819/1‑91 CCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGGGG > 2:1775473/1‑91 CCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGGGG > 2:1370126/1‑91 CCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGGGG < 1:1211879/91‑1 ACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTA > 1:2745262/1‑91 TCCCCTTGAGCTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAG > 2:568696/1‑91 CCCCTTGAGCTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGG > 2:3713556/1‑91 CCCTTGAGCTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGA > 1:817642/1‑91 CCTTGAGCTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAA > 2:3105791/1‑91 TTGAGCTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACG > 1:1220041/1‑91 TTGAGCTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGAATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACG > 2:3912464/1‑91 GAGCTTTAGCGAATAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGCACGCA > 2:3160196/1‑91 AGCTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACTCAG > 1:3065361/1‑91 AGCTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAG > 2:505548/1‑91 GCTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTAGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGT > 1:3325507/1‑91 CTTTAGCGATTAGGGGAGTAAAGGACTACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTT > 2:525725/1‑91 CTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTT > 1:449513/1‑91 CTTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTT > 2:2964522/1‑91 TTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTG > 1:920563/1‑91 TTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTG > 1:1809724/1‑91 TTTAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTG > 2:1651030/1‑91 TAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGA > 1:1651441/1‑91 TAGCGATTAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGA > 1:3814834/1‑91 AGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGG < 2:1431877/91‑1 AGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGG < 1:827695/91‑1 AGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGG > 2:791937/1‑91 GGGGAGTAAAGGAATACAGTAGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGC < 2:69168/91‑1 GGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCA < 2:1365397/91‑1 GGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCAC < 1:3910033/91‑1 GGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCAC > 1:547813/1‑91 GAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTTAGGCACA > 1:1958385/1‑91 GAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTGAGGCACA > 1:1958373/1‑91 GAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACA < 1:2508543/91‑1 GAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACA < 2:1716459/91‑1 GAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACA > 1:1715655/1‑91 GAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAACGCACA > 2:2631583/1‑91 CGTTCCTCTTCACCTTTAGTGATTAGAGGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/672634‑672540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggggAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACA > USA300TCH1516_ALE/672565‑672654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |