BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	672540 =	204 (1.000)	19 (0.100)	12/150	NT	8.9%	intergenic (+142/‑237)	nth_1/btuF	Endonuclease III/Vitamin B12‑binding protein
*	?	USA300TCH1516_ALE	672565 =	198 (1.040)	19 (0.100)	12/150	NT	8.9%	intergenic (+167/‑212)	nth_1/btuF	Endonuclease III/Vitamin B12‑binding protein

Only 100 of 279 total aligned reads displayed.

ATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACA  >  USA300TCH1516_ALE/672475‑672654

atataATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTGAAGGGGa                                                                                           >  1:1964374/1‑91 (MQ=255)

 tataATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAg                                                                                          <  1:155371/91‑1 (MQ=255)

  ataataAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGt                                                                                         >  1:442224/1‑91 (MQ=255)

    aataaataGAAGCATATAAAGAGAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTaa                                                                                       <  1:3866432/91‑1 (MQ=255)

    aataaataGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTaa                                                                                       >  1:125793/1‑91 (MQ=255)

    aataaataGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTaa                                                                                       >  1:2176639/1‑91 (MQ=255)

     ataaataGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTaaa                                                                                      >  1:1840730/1‑91 (MQ=255)

         ataGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGaa                                                                                  <  2:3106867/91‑1 (MQ=255)

          taGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAAt                                                                                 >  2:1203452/1‑91 (MQ=255)

            gAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATAc                                                                               >  1:2083478/1‑91 (MQ=255)

            gAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATAc                                                                               <  2:1213495/91‑1 (MQ=255)

              aGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAg                                                                             <  2:576501/91‑1 (MQ=255)

              aGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAg                                                                             <  2:341983/91‑1 (MQ=255)

               gCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAgt                                                                            >  2:415746/1‑91 (MQ=255)

               gCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAgt                                                                            <  2:234279/91‑1 (MQ=255)

               gCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAgt                                                                            <  2:3338126/91‑1 (MQ=255)

                cATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAgtt                                                                           >  2:2253728/1‑91 (MQ=255)

                 atatAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAgttg                                                                          <  2:1993812/91‑1 (MQ=255)

                    taAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGttgttt                                                                       <  1:639072/91‑1 (MQ=255)

                     aaaGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGttgtttg                                                                      <  2:206770/91‑1 (MQ=255)

                       aGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTtgtg                                                                    <  1:133018/91‑1 (MQ=255)

                       aGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTtgtg                                                                    <  1:1860461/91‑1 (MQ=255)

                        gAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTgc                                                                   <  1:1541439/91‑1 (MQ=255)

                         aaaaaaaCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTgca                                                                  <  2:799355/91‑1 (MQ=255)

                          aaaaaaCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTgcag                                                                 <  1:3433669/91‑1 (MQ=255)

                          aaaaaaCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTgcag                                                                 <  2:6930/91‑1 (MQ=255)

                            caaaCAACTGTTTTTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGACTACAGTTGTTTGTgcagca                                                               >  1:2511903/2‑91 (MQ=38)

                              aaCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAAc                                                             <  2:2526187/91‑1 (MQ=255)

                              aaCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAAc                                                             <  1:138655/91‑1 (MQ=255)

                               aCAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACt                                                            >  2:3018962/1‑91 (MQ=255)

                                cAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTg                                                           >  2:2140362/1‑91 (MQ=255)

                                cAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTg                                                           <  2:3715148/91‑1 (MQ=255)

                                  gttgttTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCACGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCa                                                         >  2:2966910/1‑91 (MQ=255)

                                  gttgttTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCa                                                         <  1:267400/91‑1 (MQ=255)

                                  gttgttTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACCGCa                                                         >  1:3184965/1‑91 (MQ=255)

                                   ttgtttgtttgtGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTCGTTTGTGCAGCAACTGCAt                                                        >  2:1151330/1‑91 (MQ=255)

                                    tgtttgtttgtGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATa                                                       <  2:2792540/91‑1 (MQ=255)

                                    tgtttgtttgtGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATa                                                       >  1:3061340/1‑91 (MQ=255)

                                     gtttgtttgtGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATaa                                                      >  1:2126468/1‑91 (MQ=255)

                                        tgtttgtGCAGCAACTGCATAAGAGCCCCTAATCCCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAg                                                   <  2:280881/91‑1 (MQ=255)

                                         gtttgtGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGc                                                  >  1:2714608/1‑91 (MQ=255)

                                         gtttgtGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGc                                                  >  1:206676/1‑91 (MQ=255)

                                         gtttgtGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGc                                                  >  1:2714529/1‑91 (MQ=255)

                                           ttgtGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCct                                                <  1:2948717/91‑1 (MQ=255)

                                              tgCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTa                                             >  1:2761502/1‑91 (MQ=255)

                                              tgCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTa                                             <  2:3276645/91‑1 (MQ=255)

                                               gcagcaACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTaa                                            <  1:3487281/91‑1 (MQ=255)

                                                cagcaACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAAt                                           <  1:2471276/91‑1 (MQ=255)

                                                  gcaACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCa                                         <  1:3712595/91‑1 (MQ=255)

                                                  gcaACGGAATAGGAGCCCCGAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCa                                         <  2:3520185/91‑1 (MQ=38)

                                                    aaCTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACt                                       <  1:393565/91‑1 (MQ=255)

                                                     aCTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTa                                      <  1:10104/91‑1 (MQ=255)

                                                      cTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTaa                                     >  2:2377107/1‑91 (MQ=255)

                                                       tGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTaaa                                    >  1:3019640/1‑91 (MQ=255)

                                                        gCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAg                                   >  1:1133287/1‑91 (MQ=255)

                                                         cATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAgg                                  >  1:567569/1‑91 (MQ=255)

                                                          aTAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGt                                 >  2:867908/1‑91 (MQ=255)

                                                          aTAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGt                                 <  2:1651445/91‑1 (MQ=255)

                                                          aTAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGt                                 >  1:2301370/1‑91 (MQ=255)

                                                           tAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTg                                <  2:2233960/91‑1 (MQ=255)

                                                             agagCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGaa                              >  1:981742/1‑91 (MQ=255)

                                                             agagCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGaa                              >  1:533404/1‑91 (MQ=255)

                                                              gagCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTGAAGGTGAag                             <  2:2623414/91‑1 (MQ=255)

                                                              gagCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAag                             <  2:2288162/91‑1 (MQ=255)

                                                               agCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAACAGCCTCTAATCACTAAAGGTGAaga                            >  1:3666835/1‑91 (MQ=255)

                                                               agCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAaga                            >  1:2997482/1‑91 (MQ=255)

                                                               agCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAaga                            >  1:3555138/1‑91 (MQ=255)

                                                               agCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAaga                            <  1:921551/91‑1 (MQ=255)

                                                                 CCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAgg                          >  2:1370126‑M1/1‑91 (MQ=255)

                                                                 CCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAgg                          >  1:2409819‑M1/1‑91 (MQ=255)

                                                                 CCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAgg                          <  1:1211879‑M1/91‑1 (MQ=255)

                                                                  cccttgagctttagcgattaggggAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGa                         >  1:817642‑M2/25‑91 (MQ=255)

                                                                   CCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGaa                        <  2:978350‑M1/91‑1 (MQ=255)

                                                                   CCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGaa                        <  2:2006215‑M1/91‑1 (MQ=255)

                                                                     ttgagctttagcgattaggggAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGAATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACg                      >  2:3912464‑M2/22‑91 (MQ=255)

                                                                     TAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACg                      >  1:763500‑M1/1‑91 (MQ=255)

                                                                      aaTCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGc                     <  1:1641545/91‑1 (MQ=255)

                                                                      aaTCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGc                     >  1:2425986/1‑91 (MQ=255)

                                                                       gagctttagcgaataggggAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGCACGCa                    >  2:3160196‑M2/20‑91 (MQ=255)

                                                                       aTCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCa                    >  1:851106/1‑91 (MQ=255)

                                                                       aTCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCa                    <  2:1921294/91‑1 (MQ=255)

                                                                       aTCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAAAGGAACGCa                    >  1:3791276/1‑91 (MQ=255)

                                                                         gctttagcgattaggggAGTAAAGGAATACAGTTGTTAGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGt                  >  1:3325507‑M2/18‑91 (MQ=255)

                                                                         cGCTAAAGCTCAAAGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGt                  <  2:683644/91‑1 (MQ=255)

                                                                          gCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACTCAGtt                 >  2:3645347/1‑91 (MQ=255)

                                                                          gCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGtt                 >  1:2236235/1‑91 (MQ=255)

                                                                          ctttagcgattaggggAGTAAAGGACTACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGtt                 >  2:525725‑M2/17‑91 (MQ=255)

                                                                            tAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTgg               >  1:3306796/1‑91 (MQ=255)

                                                                             tagcgattaggggAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGa              >  1:1651441‑M2/14‑91 (MQ=255)

                                                                              aaGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGAt             <  1:1804216/91‑1 (MQ=255)

                                                                               aGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATg            <  2:2786082/91‑1 (MQ=255)

                                                                                 cTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCt          <  2:2863017/91‑1 (MQ=255)

                                                                                 cTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCt          <  2:1083673/91‑1 (MQ=255)

                                                                                 cTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCt          <  1:956012/91‑1 (MQ=255)

                                                                                   cAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTaa        <  1:3202771/91‑1 (MQ=255)

                                                                                    aaGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAg       <  2:1383725/91‑1 (MQ=255)

                                                                                    aaGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAg       >  1:1730288/1‑91 (MQ=255)

                                                                                    aaGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTCGATGCTAAg       <  1:1979712/91‑1 (MQ=255)

                                                                                     aggggAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAgg      <  2:1431877‑M2/86‑1 (MQ=255)

                                                                                         gAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTGAGGcaca  >  1:1958373‑M2/2‑91 (MQ=255)

ATATAATAAATAGAAGCATATAAAGAAAAAAACAGTTGTTTGTTTGTGCAGCAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGGAGTAAAGGAATACAGTTGTTTGTGCAGCAACTGCATAAAAGCCTCTAATCACTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACA  >  USA300TCH1516_ALE/672475‑672654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.