| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 682222 = | 235 (1.150) | 36 (0.200) | 16/140 | NT | 15.8% | intergenic (‑64/+45) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF |
| ? | USA300TCH1516_ALE | 682264 = | 178 (1.000) | intergenic (‑106/+3) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF | |||||
AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/682321‑682222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATT > USA300TCH1516_ALE/682264‑682352 AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG < 1:1437416/91‑1AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG < 2:3083417/91‑1AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG < 2:455615/91‑1AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCG < 2:455355/91‑1 AAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGG > 2:2015574/1‑91 GTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGA < 2:2885157/91‑1 GTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGA < 1:2970608/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAGGAAAATAATATGAAAAAGTAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 1:919315/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 1:3688954/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 1:3130251/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 1:3130545/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG < 1:3686875/91‑1 TTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAG > 1:1492204/1‑91 TTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGTTATCGGGAGT > 1:1676857/1‑91 TTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGT > 2:3046375/1‑91 TTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGT > 2:3046111/1‑91 TGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTT > 2:251036/1‑91 GAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATTCGCTTTAGCGATGGTATCGGGAGTTG < 2:2246642/91‑1 GAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTG > 2:3325329/1‑91 GAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTG > 2:1593016/1‑91 AGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGTGTTGA > 2:47236/1‑91 AGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGA > 1:3087084/1‑91 AGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGA > 1:3639375/1‑91 AGAAAGATAATAAACCAGTCTATGAAGAATATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGA > 2:3451080/1‑91 TGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATT > 1:3088741/1‑91 ATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATACTTTATTTTTTCATATTATATTCTTCATAAA > 2:3063279/1‑91 ATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATT > 1:3737151/1‑91 ATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATT > 1:3737152/1‑91 ATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATT > 1:3737139/1‑91 TAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTA > 1:2317388/1‑91 AAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATC > 1:763356/1‑91 AAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATC > 1:630704/1‑91 TCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCT > 1:3736055/1‑91 CAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATCTTATTTTCTTCATAAACTGGTTTATTATCTTTCTC > 1:3858674/1‑91 CAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTC > 1:785615/1‑91 CAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTC > 1:1325419/1‑91 CAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTC > 1:3858690/1‑91 CAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTC > 1:3270884/1‑91 CTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAA > 1:3576177/1‑91 CTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAA > 2:3596174/1‑91 CTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAA > 1:2057902/1‑91 CTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAA > 1:52771/1‑91 CTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAA > 1:3576808/1‑91 TCCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAAC > 2:135678/1‑91 CCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATATACTGGTTTATTATCTTTCTCAAACT > 2:3334642/1‑91 CCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATACACTGGTTTATTATCTTTCTCAAACT > 2:3409206/1‑91 CCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACT > 2:74172/1‑91 CCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACT > 2:659279/1‑91 CCCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACT > 2:659267/1‑91 CCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTT > 1:1251006/1‑91 CCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTT > 1:2206785/1‑91 CCTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTT > 1:1941767/1‑91 CTATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTT > 1:19519/1‑91 TATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTT > 2:3110177/1‑91 TATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTT > 2:719105/1‑91 TATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTT > 2:717041/1‑91 TATACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTT > 2:3110581/1‑91 ATACGCTTTAGCGATGGTATCGGGAGCTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTC > 2:2244911/1‑91 ACGCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAG > 2:2644296/1‑91 GCTTTAGCGATGGTATCGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCA > 2:1484303/1‑91 GGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTC > 1:1987159/1‑91 GGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTC > 1:1913261/1‑91 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT > 1:1111005/1‑91 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT < 1:2003147/91‑1 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT < 1:2091633/91‑1 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT < 1:2176940/91‑1 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT > 2:712275/1‑91 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT < 1:2968771/91‑1 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT > 2:281659/1‑91 GAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTT < 2:2120647/91‑1 AGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTC > 1:1507264/1‑91 GTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCA > 1:795799/1‑91 GTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCA < 2:2877087/91‑1 GTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGATTATTATCTTTCTCAAACTTTTCAGCAGCAATATTAGGATCTTCTTCA < 2:2449208/91‑1 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 1:2418307/91‑1 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 1:3625032/91‑1 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT > 1:1631934/1‑91 TTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCAT < 2:2021245/91‑1 TGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATA > 1:3794902/1‑91 TGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATA > 1:869733/1‑91 TGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATA > 2:1876916/1‑91 TGAGTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATA < 2:33555/91‑1 ATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCTAACTTTTTATCATCTATATTATTATCTTCTTCATATT > 2:212393/1‑91 ATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATT > 1:2800853/1‑91 ATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATT > 1:541486/1‑91 ATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATT > 1:2800880/1‑91 ATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATT > 1:2472643/1‑91 AAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAAAGAATCAACTCCCTATACGCTTTAGCGATGGTATCGGGAGTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/682321‑682222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATT > USA300TCH1516_ALE/682264‑682352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |