BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	682222 =	235 (1.150)	36 (0.200)	16/140	NT	15.8%	intergenic (‑64/+45)	USA300TCH1516_00616/rcsF_2	hypothetical protein/Outer membrane lipoprotein RcsF
*	?	USA300TCH1516_ALE	682264 =	178 (1.000)	36 (0.200)	16/140	NT	15.8%	intergenic (‑106/+3)	USA300TCH1516_00616/rcsF_2	hypothetical protein/Outer membrane lipoprotein RcsF

Only 100 of 304 total aligned reads displayed.

CTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTA  >  USA300TCH1516_ALE/682174‑682354

 tttcAAAAAGGTTATTTATAGAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGAGACCATCTCTAAAGCGTATAGGGAGTTGATTc                                                                                           <  1:3564241/91‑1 (MQ=255)

  tttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCt                                                                                          <  1:1126819/91‑1 (MQ=255)

  tttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCt                                                                                          <  1:3103796/91‑1 (MQ=255)

  tttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCt                                                                                          <  1:2487253/91‑1 (MQ=255)

  tttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCt                                                                                          <  1:1889714/91‑1 (MQ=255)

   ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                                                                         <  1:3635185/91‑1 (MQ=255)

   ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                                                                         <  1:3652552/91‑1 (MQ=255)

   gataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt                                                                                         >  1:630704‑M1/46‑91 (MQ=255)

    tAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCttt                                                                                        >  1:668185/1‑91 (MQ=255)

      aataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAt                                                                                      >  1:3737139‑M1/43‑91 (MQ=255)

        aaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttt                                                                                    >  2:1248795/1‑91 (MQ=255)

          ggTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttttt                                                                                  >  2:1933103/1‑91 (MQ=255)

            ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc                                                                                >  1:1517130/1‑91 (MQ=255)

            ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc                                                                                >  1:1682618/1‑91 (MQ=255)

              atttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCat                                                                              <  1:1001623/91‑1 (MQ=255)

              atttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCat                                                                              >  2:3863879/1‑91 (MQ=255)

              atttatAAAATAAGTTATAAGAGGATATATGTCCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCat                                                                              <  1:3365021/91‑1 (MQ=255)

                tttatgaagaatataatatgaaaaaataaagtATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat                                                                            >  2:3063279‑M1/33‑91 (MQ=255)

                ttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat                                                                            >  2:1516107/1‑91 (MQ=255)

                ttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat                                                                            <  2:3958651/91‑1 (MQ=255)

                    aaaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATattatt                                                                        >  1:756123/1‑91 (MQ=255)

                       aTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATCGGGAGTTGATTCTTTATTTTTTCATATTCttttt                                                                     >  2:2520223/1‑90 (MQ=255)

                        tAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTGTTTATTTTTTCATATTATTttct                                                                    >  2:3029215/1‑91 (MQ=255)

                          aGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATCCTTTATTTTTTCATATTATTttcttc                                                                  >  2:2313579/1‑91 (MQ=255)

                           gTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa                                                                 >  2:922867/1‑91 (MQ=255)

                            ttATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCAt                                                                >  2:2980988/1‑91 (MQ=255)

                               taAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaaa                                                             >  1:2211174/1‑91 (MQ=255)

                               taAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaaa                                                             >  1:3858157/1‑91 (MQ=255)

                                aaGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTTTTTTTTTTTTTTTCATaaaa                                                            >  2:1471519/1‑90 (MQ=255)

                                aaGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAAc                                                            >  2:864328/1‑91 (MQ=255)

                                aaGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAAc                                                            <  2:566987/91‑1 (MQ=255)

                                  gagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTg                                                          <  1:277542/91‑1 (MQ=255)

                                   agGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTgg                                                         <  1:2680956/91‑1 (MQ=255)

                                   agGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTgg                                                         <  2:2974387/91‑1 (MQ=255)

                                      atatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGttt                                                      <  2:3805481/91‑1 (MQ=255)

                                       tatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTtta                                                     <  2:2057571/91‑1 (MQ=255)

                                         tatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatt                                                   <  1:3881592/91‑1 (MQ=255)

                                         tatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTGTTTCATATTATTTTCTTCATAAACTGGTttatt                                                   >  1:3233340/1‑91 (MQ=255)

                                         ataaagaatcaactccctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatt                                                   >  1:3737151‑M2/50‑91 (MQ=255)

                                          taaagaatcaactccctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatta                                                  >  1:2317388‑M2/49‑91 (MQ=255)

                                          atGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatta                                                  <  2:2415539/91‑1 (MQ=255)

                                          atGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatta                                                  >  1:3758311/1‑91 (MQ=255)

                                           tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat                                                 >  1:3613072/1‑91 (MQ=255)

                                           tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat                                                 >  2:2702465/1‑91 (MQ=255)

                                            gTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATc                                                <  2:2929210/91‑1 (MQ=255)

                                             ttCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTACTTCATAAACTGGTTTATTATCt                                               <  2:3577081/91‑1 (MQ=255)

                                              tcatcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCtt                                              >  1:1992851/1‑91 (MQ=255)

                                              tcatcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCtt                                              <  1:521103/91‑1 (MQ=255)

                                                 TCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTtct                                           >  1:3087084‑M1/1‑91 (MQ=255)

                                                 TCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATATTCTTCATAGACTGGTTTATTATCTTtct                                           >  2:3451080‑M1/1‑91 (MQ=255)

                                                 TCAACACCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTtct                                           >  2:47236‑M1/1‑91 (MQ=255)

                                                  CAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTtctc                                          >  2:1593016‑M1/1‑91 (MQ=255)

                                                     CTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCaaa                                       <  1:3686875‑M1/91‑1 (MQ=255)

                                                      tccctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAAc                                      >  2:135678‑M2/37‑91 (MQ=255)

                                                      TCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAAc                                      <  1:2970608‑M1/91‑1 (MQ=255)

                                                        CCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtt                                    >  2:2015574‑M1/1‑91 (MQ=255)

                                                         ctatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACttt                                   >  1:19519‑M2/34‑91 (MQ=255)

                                                         CGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACttt                                   <  2:455355‑M1/91‑1 (MQ=255)

                                                         CGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACttt                                   <  1:1437416‑M1/91‑1 (MQ=255)

                                                          tatacgctttagcgatggtatcgggagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtttt                                  >  2:3110177‑M2/33‑91 (MQ=255)

                                                          gATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACtttt                                  <  1:1328273/91‑1 (MQ=255)

                                                           atacgctttagcgatggtatcgggagctgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTc                                 >  2:2244911‑M2/32‑91 (MQ=255)

                                                           aTACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTc                                 <  1:3391995/91‑1 (MQ=255)

                                                           aTACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTc                                 <  1:1711022/91‑1 (MQ=255)

                                                           aTACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTCCTCAAACTTTTc                                 >  2:3289241/1‑91 (MQ=255)

                                                           aTACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATACTCTTTTCTTCATAAACTGGTTTATTATCTTTCTCCTACTTTTc                                 >  2:721159/1‑91 (MQ=255)

                                                             aCCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAg                               <  2:2760534/91‑1 (MQ=255)

                                                              ccATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCTTACTTTTCAGc                              <  1:1289643/91‑1 (MQ=255)

                                                               cATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCa                             >  1:1829629/1‑91 (MQ=255)

                                                                aTCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCAt                            <  2:670924/91‑1 (MQ=255)

                                                                 tCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCGGCATc                           <  2:1868978/91‑1 (MQ=255)

                                                                  cGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCa                          >  1:989184/1‑91 (MQ=255)

                                                                   gCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTTTTTTCTTCATAAACTGGTTTATTATCTTTCTCCAACTTTTCAGCATCaa                         >  1:139425/1‑91 (MQ=255)

                                                                    cTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAat                        <  1:314219/91‑1 (MQ=255)

                                                                     tAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAata                       >  2:278166/1‑91 (MQ=255)

                                                                       aaGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATAtt                     <  1:3803182/91‑1 (MQ=255)

                                                                       aaGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATAtt                     <  2:1115192/91‑1 (MQ=255)

                                                                       aaGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATAtt                     <  1:1215860/91‑1 (MQ=255)

                                                                       aaGCGGATAGGGAGTTGATTCTTTATTTTTTCATATTGTTTTCTTCATAAACTGGTGTATTATCTGTCTCAAACGTTTCAGCATCAatagt                     <  2:360259/91‑3 (MQ=255)

                                                                         gCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAg                   <  2:2121023/91‑1 (MQ=255)

                                                                         gCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAg                   <  2:2454436/91‑1 (MQ=255)

                                                                         gCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAg                   >  2:2170638/1‑91 (MQ=255)

                                                                         gCGTATAGGGAGTTGATTCTTTATTTTTTCAGATTATTTTCTTCGTAAACTGGCTTACTATCTTTCTCAAACTTTTCAGCATCAATATTAg                   <  1:3155717/91‑1 (MQ=255)

                                                                             ataGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtc               >  1:1185807/1‑91 (MQ=255)

                                                                             ataGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtc               >  2:31993/1‑91 (MQ=255)

                                                                             ataGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtc               >  2:2637462/1‑91 (MQ=255)

                                                                               aGGGAGTTGATTCATTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAAtctt             <  1:3962184/91‑1 (MQ=255)

                                                                                  gagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATcttctt          <  1:2176940‑M2/83‑1 (MQ=255)

                                                                                  gagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATcttctt          <  1:2091633‑M2/83‑1 (MQ=255)

                                                                                  gagttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATcttctt          >  2:712275‑M2/9‑91 (MQ=255)

                                                                                    gttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCa        <  2:2877087‑M2/85‑1 (MQ=255)

                                                                                    gttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCa        >  1:795799‑M2/7‑91 (MQ=255)

                                                                                     ttgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCat       >  1:1631934‑M2/6‑91 (MQ=255)

                                                                                      tgatTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCata      >  1:869733‑M2/5‑91 (MQ=255)

                                                                                      tgagTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCata      <  2:33555‑M2/87‑1 (MQ=255)

                                                                                        atTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAtt    >  1:2472643‑M2/3‑91 (MQ=255)

                                                                                        atTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAtt    >  1:541486‑M2/3‑91 (MQ=255)

                                                                                        atTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATAtt    >  1:2800880‑M2/3‑91 (MQ=255)

                                                                                          tCTTTATTTTTTCATATTTTTTTCTTCATAAACTGGTTTATTATCTTTCTTAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTa  >  2:833311/1‑91 (MQ=255)

                                                                                          tCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTa  >  2:1064658/1‑91 (MQ=255)

CTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTTTCTCAAACTTTTCAGCATCAATATTAGAATCTTCTTCATATTTA  >  USA300TCH1516_ALE/682174‑682354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.