| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 682222 = | 235 (1.150) | 36 (0.200) | 16/140 | NT | 15.8% | intergenic (‑64/+45) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF |
| ? | USA300TCH1516_ALE | 682264 = | 178 (1.000) | intergenic (‑106/+3) | USA300TCH1516_00616/rcsF_2 | hypothetical protein/Outer membrane lipoprotein RcsF | |||||
Only 100 of 324 total aligned reads displayed.
TCTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTT > USA300TCH1516_ALE/682133‑682310 | aatatgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaAt > 1:541486‑M1/90‑91 (MQ=255)aatatgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaAt > 1:2800853‑M1/90‑91 (MQ=255)aatatgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaAt > 1:2472643‑M1/90‑91 (MQ=255)aatatgaagaagataataatatagatgataaaaagttagagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaAt > 2:212393‑M1/90‑91 (MQ=255) tatgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCa > 2:1876916‑M1/88‑91 (MQ=255) ttACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGATCATCaa > 1:1971097/1‑91 (MQ=255) atgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCaa < 2:2021245‑M1/5‑1 (MQ=255) atgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCaa > 1:1631934‑M1/87‑91 (MQ=255) tgaagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAAc > 1:795799‑M1/86‑91 (MQ=255) tACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAAc > 1:3641953/1‑91 (MQ=255) tACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAAc < 1:1583203/91‑1 (MQ=255) aCGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACt > 1:10577/1‑91 (MQ=255) cGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTc > 1:750606/1‑91 (MQ=255) aagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTc < 1:2003147‑M1/8‑1 (MQ=255) aagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTc < 1:2091633‑M1/8‑1 (MQ=255) aagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTc > 2:712275‑M1/84‑91 (MQ=255) aagaagattctaatattgatgctgaaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTc < 1:2968771‑M1/8‑1 (MQ=255) tttttttcttttttttTTTTTTATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTccc > 2:2110252/1‑91 (MQ=255) ttttctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGAt > 1:376469/1‑91 (MQ=255) ttttctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGAt < 2:3057139/91‑1 (MQ=255) ttctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATAc > 1:2177261/1‑91 (MQ=255) ttttttttttATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATAcc > 2:3506951/3‑91 (MQ=255) tctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATAcc < 2:654482/91‑1 (MQ=255) tctttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATAcc > 2:2208147/1‑91 (MQ=255) tttttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCAt > 2:1259821/1‑91 (MQ=255) ttttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGc < 1:2212951/91‑1 (MQ=255) tttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCt < 1:769837/91‑1 (MQ=255) tttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCt < 2:1676425/91‑1 (MQ=255) tttcATGTATATCCTCCTTTACTTATAAATAGTTTATTTATTAGATAAGTTATAAGAATATATATGTTCATCAACTCCCTATACCTTCGCt < 2:2981080/91‑1 (MQ=255) ttcATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTa > 1:1740193/1‑91 (MQ=255) cATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTaaa > 2:2369103/1‑91 (MQ=255) cATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTaaa < 1:2157780/91‑1 (MQ=255) cATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTaaa < 2:1491013/91‑1 (MQ=255) aTGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAg > 2:2254674/1‑91 (MQ=255) gTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCg < 2:2434641/91‑1 (MQ=255) gTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCg > 1:1902731/1‑91 (MQ=255) atttcctccTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGta > 2:2816415/4‑91 (MQ=255) aaaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGtata > 2:3110581‑M1/60‑91 (MQ=255) aaagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAg > 1:19519‑M1/59‑91 (MQ=255) cctcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAgg < 1:912134/91‑1 (MQ=255) cctcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAgg < 1:850099/91‑1 (MQ=255) aagtttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAgg > 1:1251006‑M1/58‑91 (MQ=255) ctcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAggg > 2:1443421/1‑91 (MQ=255) tcctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGa < 1:3533723/91‑1 (MQ=255) tttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAg > 1:3576177‑M1/55‑91 (MQ=255) tttgagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAg > 2:3596174‑M1/55‑91 (MQ=255) cctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAg > 1:11168/1‑91 (MQ=255) ctTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCTTCGCTAAAGCGTATAGGGAGt < 1:3623535/91‑1 (MQ=255) ttACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTg < 1:3160163/91‑1 (MQ=255) gagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTg > 1:1325419‑M1/52‑91 (MQ=255) gagaaagataataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTg > 1:3270884‑M1/52‑91 (MQ=255) tACTTTTAAAAAGGTTATTTATAGTATAAGTTATAAGAGGATAGATGTTCTTCATCGCCCGATACCATCGCTAAAGCGTATAGAGAGTTGa < 2:3673822/91‑1 (MQ=255) tACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGa > 1:896182/1‑91 (MQ=255) cTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAtt > 1:864497/1‑91 (MQ=255) cTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGAtt > 2:1018460/1‑91 (MQ=255) ttAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCtt < 2:3252771/91‑1 (MQ=255) tAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCttt > 1:668185/1‑91 (MQ=255) taataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTa > 1:2317388‑M1/44‑91 (MQ=255) aaaaaGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTa > 2:2393043/1‑91 (MQ=255) aataaaccagtttatgaagaaaataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAt > 1:3737151‑M1/43‑91 (MQ=255) ggTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttttt > 2:3389690/1‑91 (MQ=255) ggTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTAttttt > 2:1586236/1‑91 (MQ=255) ggTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCCTATAGGGAGTTGATTCTTTAttttt > 1:3667343/1‑91 (MQ=255) ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc > 1:1517130/1‑91 (MQ=255) ttatttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTc > 1:1682644/1‑91 (MQ=255) atttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCat < 1:1001623/91‑1 (MQ=255) tttatAAAATAAGTTATAAGAGGATATATGTTCATCATCTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCata > 2:1184892/1‑91 (MQ=255) ttatAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCatat < 2:3958651/91‑1 (MQ=255) aaaaTAAGTTATAAGAGGATATATGGTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATattatt < 2:294536/91‑1 (MQ=255) aaaTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTAttt > 1:3828409/1‑91 (MQ=255) aTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATCGGGAGTTGATTCTTTATTTTTTCATATTCttttt > 2:2520223/1‑90 (MQ=255) aTAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttc < 2:507780/91‑1 (MQ=255) aaGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttctt > 1:1153125/1‑91 (MQ=255) aaGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTttctt > 1:1436474/1‑91 (MQ=255) gTTATAAGAGGATATATGTTCATCATCTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa < 2:857454/91‑1 (MQ=255) aataatatgaaaaaataaagaATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCa > 1:3088741‑M1/22‑91 (MQ=255) ttATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCAt < 2:1090672/91‑1 (MQ=255) ttATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCAt > 1:2499902/1‑91 (MQ=255) ataAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCGTATTATTTTCTTCATaa > 1:3390269/1‑91 (MQ=255) taAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATaaa > 1:3858157/1‑91 (MQ=255) aaGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAAc > 1:3151651/1‑91 (MQ=255) aaGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAAc < 2:270003/91‑1 (MQ=255) aaGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAAc < 2:2883276/91‑1 (MQ=255) gagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGGGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTg > 1:628702/1‑91 (MQ=255) gagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTg < 1:277542/91‑1 (MQ=255) gagGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTg > 1:2722343/1‑91 (MQ=255) agGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTgg > 1:1887547/1‑91 (MQ=255) agGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTgg < 2:2974825/91‑1 (MQ=255) ggATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGt > 2:3828195/1‑91 (MQ=255) tatatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTtta < 2:2057571/91‑1 (MQ=255) atatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttat < 2:130441/91‑1 (MQ=255) tatGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatt < 1:3881592/91‑1 (MQ=255) tatGTTCATCAACTCCCGATACCATCGCTAAAGCGTACAGGGAGTCGATTCTTTATCTTTTCATATTATTTCCTTTATAAGCTTGTttatt > 2:728149/1‑91 (MQ=255) atGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTttatta > 1:1186400/1‑91 (MQ=255) tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat > 1:3613073/1‑91 (MQ=255) tGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat > 2:539852/1‑91 (MQ=255) tGTTCATCAACTCCCGATACCATCGCTAAAGCGAATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTtattat > 1:2655868/1‑91 (MQ=255) gTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATc > 2:907647/1‑91 (MQ=255) gTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTAATAAACCAGTttatgaag < 2:2733556/91‑5 (MQ=255) tcatcaACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCtt < 1:521103/91‑1 (MQ=255) | TCTTTACGTTTTTTTCTTTTTTTCATGTATATCCTCCTTTACTTTTAAAAAGGTTATTTATAAAATAAGTTATAAGAGGATATATGTTCATCAACTCCCGATACCATCGCTAAAGCGTATAGGGAGTTGATTCTTTATTTTTTCATATTATTTTCTTCATAAACTGGTTTATTATCTT > USA300TCH1516_ALE/682133‑682310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |