| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 705182 = | 212 (1.040) | 11 (0.060) | 8/142 | NT | 6.3% | intergenic (+932/+228) | nhaK_1/mntA | Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA |
| ? | USA300TCH1516_ALE | 705222 = | 142 (0.790) | intergenic (+972/+188) | nhaK_1/mntA | Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA | |||||
TATATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/705280‑705182‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTC > USA300TCH1516_ALE/705222‑705311 TATATATGACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTA < 1:1986942/91‑1 ATATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAG > 2:3385001/1‑91 TATATTACCCTCCTAGTAATATATATACCGTTCCCGATCGGACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGA < 2:1363039/91‑1 tTATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAA < 1:2137787/90‑1 ATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAA > 1:3852534/1‑91 ATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAA > 1:3852009/1‑91 ATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAA > 1:3851970/1‑91 ATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAA > 1:3851687/1‑91 ATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAA > 2:2094883/1‑91 ATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAA < 1:3899793/91‑1 ATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAA < 1:1616682/91‑1 ATATTACAATCCTATAAATATATATACCGTTCCAGAACGCACGATATGGTGGTATTAGAACTTCTCTTTGAAAGAAAGAGAAAAGCTAGAA > 2:2559261/1‑91 TATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAG > 1:3573699/1‑91 ATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGT > 2:36158/1‑91 TACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTC < 1:3440393/91‑1 TACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTC < 1:3440416/91‑1 ACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCT > 2:240748/1‑91 ACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCT > 2:240881/1‑91 ACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCT < 1:3308302/91‑1 ACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCT < 1:1636418/91‑1 GAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTA > 1:3390491/1‑91 GAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTA > 1:3390684/1‑91 AACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTTATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAA > 1:949862/1‑91 CTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATA > 1:2993857/1‑91 TTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATAT > 2:865838/1‑91 TTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATAT > 2:868756/1‑91 TTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATAT > 1:1994996/1‑91 TCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATCCCCCCATATCGTGCGATCGGGAACGGTATATATATTCATAGCAGGGTAATATA > 2:2387338/1‑91 CTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATAT > 1:586357/1‑91 TCTTTGAACGAAAGAGAAAAGCTAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATA > 2:2082627/1‑91 CTTTGAACGAAAGAGAAAAGCTAGAAGTTCTCATACCACCATATCGTGCGATCGGGACCGGTATATATATTAATAGGAGGGTAATATATAT > 1:3507458/1‑91 GAAGTTCTAATACCACCATATCGTGCGATCGGGCACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATT > 2:1783534/1‑91 GAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAGCGCACGATATGGGACTATT < 2:3454836/91‑1 GAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATT > 2:70865/1‑91 GAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATT > 2:70852/1‑91 GAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATT > 1:629364/1‑91 GAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATT < 2:2481805/91‑1 AAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTCATATATATTTAACGCACGATATGGGACTATTA > 2:478047/1‑91 AAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTA > 1:2134883/1‑91 AAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTA > 2:1733264/1‑91 AAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTA > 2:1733200/1‑91 GTTCTAATGCCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGC < 2:3479306/91‑1 GTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGC > 2:2676370/1‑91 GTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGC > 1:487367/1‑91 TTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCC < 2:3396600/91‑1 TTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCC < 1:1464945/91‑1 TTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCC > 2:48374/1‑91 TCTAATACCAGCATATCGTGCGATCGGGAACGGTATAGAGATTAATAGGAGGGTAAGATATATTTAACGCACGATATGGGACTATTAGCCT < 2:2674291/91‑1 TCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCT < 1:2634903/91‑1 TCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCT > 1:2545275/1‑91 TCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCT < 1:2634946/91‑1 TCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCT < 2:315789/91‑1 CTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTT > 2:2870989/1‑91 CTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTT > 2:734659/1‑91 CTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTT < 2:380395/91‑1 TAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTC < 1:1078137/91‑1 TATATATTACCCTCCTATTAATATATATACCGTTCCCGATCGCACGATATGGTGGTATTAGAACTTCTCTTTGAACGAAAGAGAAAAGCTAGAAGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/705280‑705182‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTC > USA300TCH1516_ALE/705222‑705311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |