BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	705182 =	212 (1.040)	11 (0.060)	8/142	NT	6.3%	intergenic (+932/+228)	nhaK_1/mntA	Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA
*	?	USA300TCH1516_ALE	705222 =	142 (0.790)	11 (0.060)	8/142	NT	6.3%	intergenic (+972/+188)	nhaK_1/mntA	Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA

Only 100 of 220 total aligned reads displayed.

TTTGATTTAAAGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCG  >  USA300TCH1516_ALE/705134‑705312

tttGATTTAAAGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAATGAGAAGTTCTAAt                                                                                          >  1:3958997/1‑91 (MQ=255)

tttGATTTAAAGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAAt                                                                                          <  1:1692800/91‑1 (MQ=255)

 ttGATTTAAAGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATa                                                                                         <  1:3531601/91‑1 (MQ=255)

  tGATTTAAAGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATac                                                                                        >  2:3229040/1‑91 (MQ=255)

   gATTTAAAGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATacc                                                                                       <  1:2848923/91‑1 (MQ=255)

    aTTTAAAGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTCATacca                                                                                      >  2:2654042/1‑91 (MQ=255)

    aTTTAAAGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATacca                                                                                      <  2:157500/91‑1 (MQ=255)

       tAAAGAGTGACCAATGTTTACAGTTTACTTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCACAGAGAAGTTCTAATAccacca                                                                                   >  2:42581/1‑91 (MQ=255)

        aaaGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCat                                                                                  <  2:3336372/91‑1 (MQ=255)

         aaGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCata                                                                                 <  2:2797317/91‑1 (MQ=255)

         aaGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCata                                                                                 <  1:1746755/91‑1 (MQ=255)

         aaGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCata                                                                                 >  1:211978/1‑91 (MQ=255)

          agagTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCatat                                                                                >  1:3739489/1‑91 (MQ=255)

          agagTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCatat                                                                                >  1:2415557/1‑91 (MQ=255)

            agTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCg                                                                              >  2:1120121/1‑91 (MQ=255)

            agTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCg                                                                              <  1:3842920/91‑1 (MQ=255)

            agTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCg                                                                              <  1:2237139/91‑1 (MQ=255)

             gTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGt                                                                             <  1:749737/91‑1 (MQ=255)

             gTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGt                                                                             >  2:2120876/1‑91 (MQ=255)

               gACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGc                                                                           <  1:511270/91‑1 (MQ=255)

               gACAAATGTTTACAGTTTAATTAAAACTGCAGAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGc                                                                           <  2:1738861/91‑1 (MQ=255)

                aCAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCg                                                                          >  2:2328422/1‑91 (MQ=255)

                aCAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCg                                                                          >  2:2160109/1‑91 (MQ=255)

                aCAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCg                                                                          <  1:2602023/91‑1 (MQ=255)

                 cAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGa                                                                         >  1:1890182/1‑91 (MQ=255)

                 agaaTGTTTACAGTTTAATAAAAACTGCATAAGACCGTCTAGCTTTCCTCTGTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGa                                                                         <  2:2589268/89‑1 (MQ=18)

                  aaaTGTTTACAGTTTAATTAAAACTGCATAAGGACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACGACCATATCGTGCGAt                                                                        <  1:3374705/91‑1 (MQ=255)

                  aaaTGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGAt                                                                        <  2:3958395/91‑1 (MQ=255)

                   aaTGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATc                                                                       <  1:3485126/91‑1 (MQ=255)

                     tGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCgg                                                                     <  1:1714688/91‑1 (MQ=255)

                             gTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGta                                                             >  1:3233983/1‑91 (MQ=255)

                             gTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGta                                                             <  1:3632993/91‑1 (MQ=255)

                                taattgaAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGtatat                                                          <  2:659821/91‑1 (MQ=255)

                                taattaaAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGtatat                                                          <  1:3362946/91‑1 (MQ=255)

                                taattaaAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGtatat                                                          <  1:1175803/91‑1 (MQ=255)

                                taattaaAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGtatat                                                          >  1:67074/1‑91 (MQ=255)

                                  attaaAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAACTTCTAATACCACCATATCGTGCGATCGGGAACGGtatatat                                                        >  2:3482385/1‑91 (MQ=255)

                                   ttaaAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGtatatata                                                       >  2:517019/1‑91 (MQ=255)

                                   ttaaAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGtatatata                                                       >  2:283657/1‑91 (MQ=255)

                                     aaaaCTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGCAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTCTATATAtt                                                     >  2:2878305/1‑91 (MQ=255)

                                     aaaaCTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATAtt                                                     <  1:2500301/91‑1 (MQ=255)

                                     aaaaCTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATAtt                                                     <  2:3118954/91‑1 (MQ=255)

                                       aaCTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTaa                                                   <  2:1280227/91‑1 (MQ=255)

                                       aaCTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTaa                                                   >  2:1969568/1‑91 (MQ=255)

                                          tGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATag                                                <  2:1751917/91‑1 (MQ=255)

                                          tGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATag                                                <  1:1384140/91‑1 (MQ=255)

                                            cATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATagga                                              >  1:811501/1‑91 (MQ=255)

                                             aTAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATaggag                                             >  2:1149947/1‑91 (MQ=255)

                                                AGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGt                                          >  2:240881‑M1/1‑91 (MQ=255)

                                                 gaacttctctttgaacgaaagagaaaagctagaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTa                                         >  1:3390491‑M2/40‑91 (MQ=255)

                                                 GAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTa                                         <  1:3440416‑M1/91‑1 (MQ=255)

                                                   ACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAat                                       >  2:36158‑M1/1‑91 (MQ=255)

                                                    cttctctttgaacgaaagagaaaagctagaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAata                                      >  1:2993857‑M2/37‑91 (MQ=255)

                                                    CTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAata                                      >  1:3573699‑M1/1‑91 (MQ=255)

                                                     ttctctttgaacgaaagagaaaagctagaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAatat                                     >  1:1994996‑M2/36‑91 (MQ=255)

                                                     ttctctttgaacgaaagagaaaagctagaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAatat                                     >  2:868756‑M2/36‑91 (MQ=255)

                                                     TTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTaataa                                     <  1:2137787‑M1/91‑2 (MQ=255)

                                                     TTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAatat                                     >  1:3852534‑M1/1‑91 (MQ=255)

                                                     TTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAatat                                     >  1:3851970‑M1/1‑91 (MQ=255)

                                                     TTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAatat                                     <  1:1616682‑M1/91‑1 (MQ=255)

                                                      tctctttgaacgaaagagaaaagctagaagttctAATCCCCCCATATCGTGCGATCGGGAACGGTATATATATTCATAGCAGGGTAatata                                    >  2:2387338‑M2/35‑91 (MQ=255)

                                                      TCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTCCGATCGGGAACGGTATATATATTACTAGGAGGGTAatata                                    <  2:1363039‑M1/91‑1 (MQ=255)

                                                        tctttgaacgaaagagaaaagctagaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAatatata                                  >  2:2082627‑M2/33‑91 (MQ=255)

                                                         aGCTTTTCTCTTTCGTTCAAAGAGCAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAatatatct                                 >  2:796989/1‑89 (MQ=255)

                                                           cTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATAttt                               <  2:1471720/91‑1 (MQ=255)

                                                           cTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATAttt                               >  1:1632302/1‑91 (MQ=255)

                                                            ttttCTCTGTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTa                              <  2:2482698/91‑1 (MQ=255)

                                                              ttCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAAc                            >  1:508189/1‑91 (MQ=255)

                                                              ttCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAAc                            <  2:381200/91‑1 (MQ=255)

                                                              ttCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAAc                            >  1:2547276/1‑91 (MQ=255)

                                                               tctcTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACg                           <  1:1090258/91‑1 (MQ=255)

                                                               tctcTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACg                           <  2:3798183/91‑1 (MQ=255)

                                                               tctcTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACg                           <  1:1515435/91‑1 (MQ=255)

                                                               tctcTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACg                           <  1:3835115/91‑1 (MQ=255)

                                                               gctctTTCGTTCGAAGTGAAGTTCTAATACCACCATAGCGTGAGTTCGGTAAAGGTATATATATTAAGAGGAGGGTAATATATATTTAACg                           <  2:2296276/90‑1 (MQ=255)

                                                                 tctTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCa                         >  1:3888473/1‑91 (MQ=255)

                                                                  ctTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCAc                        <  1:1031899/91‑1 (MQ=255)

                                                                  ctTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCAc                        >  1:1291892/1‑91 (MQ=255)

                                                                  ctTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCAc                        >  2:736069/1‑91 (MQ=255)

                                                                  ctTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCAc                        <  1:560975/91‑1 (MQ=255)

                                                                    ttCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGa                      <  2:1190068/91‑1 (MQ=255)

                                                                      cGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGata                    >  1:784209/1‑91 (MQ=255)

                                                                      cGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGata                    <  1:2864374/91‑1 (MQ=255)

                                                                       aacgaaaGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGatat                   >  1:2287494/5‑91 (MQ=255)

                                                                          cAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATggg                <  1:3142913/91‑1 (MQ=255)

                                                                          cAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATggg                >  2:454498/1‑91 (MQ=255)

                                                                            aaGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTGACGCACGATATGGGAc              >  2:3032337/1‑91 (MQ=255)

                                                                            aaGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGAc              >  1:1647691/1‑91 (MQ=255)

                                                                             agagAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACt             <  1:3418922/91‑1 (MQ=255)

                                                                                gaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAGCGCACGATATGGGACTAtt          <  2:3454836‑M2/83‑1 (MQ=255)

                                                                                gaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTAtt          >  1:629364‑M2/9‑91 (MQ=255)

                                                                                gaagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTAtt          >  2:70865‑M2/9‑91 (MQ=255)

                                                                                 aagttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTa         >  2:1733200‑M2/8‑91 (MQ=255)

                                                                                   gttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGc       >  1:487367‑M2/6‑91 (MQ=255)

                                                                                   gttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGc       >  2:2676370‑M2/6‑91 (MQ=255)

                                                                                    ttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGcc      >  2:48374‑M2/5‑91 (MQ=255)

                                                                                    ttctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGcc      <  1:1464945‑M2/87‑1 (MQ=255)

                                                                                     tctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCt     <  1:2634903‑M2/88‑1 (MQ=255)

                                                                                     tctAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCt     >  1:2545275‑M2/4‑91 (MQ=255)

                                                                                        aaTACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCg  <  2:1888562/91‑1 (MQ=255)

TTTGATTTAAAGAGTGACAAATGTTTACAGTTTAATTAAAACTGCATAAGAACTTCTAGCTTTTCTCTTTCGTTCAAAGAGAAGTTCTAATACCACCATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCG  >  USA300TCH1516_ALE/705134‑705312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.