| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 705321 = | 156 (0.770) | 10 (0.060) | 7/142 | NT | 6.0% | intergenic (+1071/+89) | nhaK_1/mntA | Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA |
| ? | USA300TCH1516_ALE | 705378 = | 175 (0.970) | intergenic (+1128/+32) | nhaK_1/mntA | Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA | |||||
ATGAAATAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/705418‑705321‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaacatCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGA > USA300TCH1516_ALE/705378‑705466 ATGAAATAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACA > 1:966981/1‑91 TGAAATAACACGTTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACAT > 1:3032337/1‑91 TGAAATAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACAT > 2:2234299/1‑91 TGAAATAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACAT > 2:2234107/1‑91 TGAAATAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACAT > 2:2009735/1‑91 TGAAATAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGCTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACAc > 2:1477360/1‑90 AAATAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCA > 2:93994/1‑91 AATAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAA < 1:3474440/91‑1 ATAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAAC > 2:511330/1‑91 ATAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAAC > 1:762248/1‑91 TAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACA < 1:575240/91‑1 TAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACA < 1:575638/91‑1 TAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACA < 1:576257/91‑1 TAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACA < 1:661062/91‑1 TAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACA < 2:3771992/91‑1 AACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACAT > 1:227836/1‑91 AACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACAT > 1:2379817/1‑91 AACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACAT < 1:3839708/91‑1 GCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACATCAATT > 1:2013775/1‑91 AAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACATCAATTCATCTTACTTCATTAAAA > 2:3336621/1‑91 TGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGG‑‑TTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTT > 1:3032667/1‑91 ATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACATCAATTCATCTTACTTCATTAAAACACAGTGTGTT > 2:1877373/1‑91 GCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATG > 1:1116650/1‑91 GCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATG > 1:3851175/1‑91 GCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATG > 1:1116573/1‑91 CAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGt > 2:1764208/1‑90 CAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGC > 2:1763958/1‑91 AATATTGGTATCTCCAATATTTTAGGCCACACATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGT > 2:1033039/1‑91 GGTATCTCCAATATTTTAGGCCACACATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTT > 1:2300413/1‑91 CATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGT > 2:976964/1‑91 CATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGT > 1:1510125/1‑91 ATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTA > 1:2377109/1‑91 ATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTA > 1:780819/1‑91 ATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTA < 1:1540929/91‑1 ATCAACATCAATTCAACTTACTTCATTAAAACACAGCGTGTTATTTCAGGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTA < 1:1734187/91‑1 TCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAG > 1:2951470/1‑91 TCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAG > 1:1210608/1‑91 CAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGT < 2:2020942/91‑1 CAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGT < 2:2020974/91‑1 CAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGT < 2:2020885/91‑1 AACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTA < 1:1215836/91‑1 CATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAG < 2:2230329/91‑1 CATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAG < 1:1327300/91‑1 CATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAG > 2:359120/1‑91 CATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAG > 1:1142860/1‑91 CATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAG < 1:1905211/91‑1 CATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAG > 1:926735/1‑91 ATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGA > 1:1852651/1‑91 ATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTAAATATTTGATTTCATCACTCTCTAGTAAGA > 2:3619914/1‑91 ATGAAATAACACGCTGTGTTTTAATGAAGTAAGATGAATTGATGTTGATGCAACCTAAAATATTGGTATCTCCAATATTTTAGGCCACACATCAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/705418‑705321‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaacatCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGA > USA300TCH1516_ALE/705378‑705466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |