BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	705321 =	156 (0.770)	10 (0.060)	7/142	NT	6.0%	intergenic (+1071/+89)	nhaK_1/mntA	Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA
*	?	USA300TCH1516_ALE	705378 =	175 (0.970)	10 (0.060)	7/142	NT	6.0%	intergenic (+1128/+32)	nhaK_1/mntA	Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA

Only 100 of 250 total aligned reads displayed.

CGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGT  >  USA300TCH1516_ALE/705290‑705468

 gATATGAGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAAt                                                                                         <  2:462823/91‑1 (MQ=255)

  gctgtgttttaatgaagtaagatgaattgatgttgatgcaacctaaaatattggtatctccaatattttaggccacacatcaacatCAAtt                                                                                        >  1:2013775‑M2/87‑91 (MQ=255)

      gggACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATc                                                                                    >  1:2468969/1‑91 (MQ=255)

      gggACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATc                                                                                    <  2:408213/91‑1 (MQ=255)

      gggACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATc                                                                                    >  1:1247385/1‑91 (MQ=255)

      gggACTATTAGCCTTCGACTGTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATc                                                                                    <  2:2425299/91‑1 (MQ=255)

       ggACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCt                                                                                   >  2:950216/1‑91 (MQ=255)

       ggACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCt                                                                                   <  1:270217/91‑1 (MQ=255)

       ggACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCt                                                                                   <  1:1124870/91‑1 (MQ=255)

        gACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCtt                                                                                  >  1:692146/1‑91 (MQ=255)

          cTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTAc                                                                                >  2:3588204/1‑91 (MQ=255)

          cTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTAc                                                                                >  2:1904935/1‑91 (MQ=255)

          cTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTAc                                                                                >  1:3820549/1‑91 (MQ=255)

           tATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACt                                                                               <  1:3715693/91‑1 (MQ=255)

             ttAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTc                                                                             >  2:528454/1‑91 (MQ=255)

              tAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCa                                                                            <  1:3462397/91‑1 (MQ=255)

               aggcTTCGTCTTTGGTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCAt                                                                           <  2:3862267/88‑1 (MQ=255)

               aGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATGCCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCAt                                                                           >  1:3950087/1‑91 (MQ=255)

               aGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCAt                                                                           >  1:3608182/1‑91 (MQ=255)

                gCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCAtt                                                                          >  2:944095/1‑91 (MQ=255)

                   ttCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTaaa                                                                       <  2:1598477/91‑1 (MQ=255)

                    tCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGGGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTaaaa                                                                      <  2:2787378/91‑1 (MQ=255)

                    aagatgaattgatgttgatgcaacctaaaatattggtatctccaatattttaggccacacatcaacatCAATTCATCTTACTTCATTaaaa                                                                      >  2:3336621‑M2/69‑91 (MQ=255)

                     cGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAac                                                                     <  2:1011126/91‑1 (MQ=255)

                     cGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAac                                                                     <  1:2491824/91‑1 (MQ=255)

                      gACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAaca                                                                    >  1:2943972/1‑91 (MQ=255)

                       aCTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAacac                                                                   <  2:513225/91‑1 (MQ=255)

                         tttGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAg                                                                 >  1:1339170/1‑91 (MQ=255)

                         tttGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAg                                                                 >  1:18588/1‑91 (MQ=255)

                          ttGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGc                                                                <  2:2568224/91‑1 (MQ=255)

                          ttGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGc                                                                >  2:620487/1‑91 (MQ=255)

                           ggTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCg                                                               <  2:1161277/90‑1 (MQ=255)

                            gTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCgt                                                              >  2:2836310/1‑91 (MQ=255)

                            gTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCgt                                                              <  1:326797/91‑1 (MQ=255)

                            gTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCgt                                                              >  2:3280776/1‑91 (MQ=255)

                            gTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACAAAGCgt                                                              >  2:1146726/1‑91 (MQ=255)

                               atgttgatgcaacctaaaatattggtatctccaatattttaggccacacatcaacatCAATTCATCTTACTTCATTAAAACACAGTGTGtt                                                           >  2:1877373‑M2/58‑91 (MQ=255)

                               ATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGtt                                                           >  1:2379817‑M1/1‑91 (MQ=255)

                                TGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTa                                                          <  1:575638‑M1/91‑1 (MQ=255)

                                TGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTa                                                          <  1:661062‑M1/91‑1 (MQ=255)

                                     gTGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAGCATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCa                                                     >  2:1477360‑M1/2‑91 (MQ=255)

                                     ATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCa                                                     >  2:2009735‑M1/1‑91 (MQ=255)

                                     ATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCa                                                     >  2:2234107‑M1/1‑91 (MQ=255)

                                     ATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAACGTGTTATTTCa                                                     >  1:3032337‑M1/1‑91 (MQ=255)

                                      TGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCAt                                                    >  1:966981‑M1/1‑91 (MQ=255)

                                       gcaacctaaaatattggtatctccaatattttaggccacacatcaacatCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATg                                                   >  1:1116573‑M2/50‑91 (MQ=255)

                                       gcaacctaaaatattggtatctccaatattttaggccacacatcaacatCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATg                                                   >  1:3851175‑M2/50‑91 (MQ=255)

                                        tgtgGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGc                                                  <  1:1926218/91‑1 (MQ=255)

                                        caacctaaaatattggtatctccaatattttaggccacacatcaacatCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCAtgt                                                  >  2:1764208‑M2/49‑90 (MQ=255)

                                          tgGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCtt                                                >  1:3185026/1‑91 (MQ=255)

                                          tgGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCtt                                                <  1:483824/91‑1 (MQ=255)

                                           ggCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTc                                               >  1:320541/1‑91 (MQ=255)

                                              cTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCgt                                            <  1:208091/91‑1 (MQ=255)

                                              cTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCgt                                            <  1:2451174/91‑1 (MQ=255)

                                                aaaaTATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCgtgt                                          <  1:1017817/91‑1 (MQ=255)

                                                  aaTATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTAc                                        >  1:3306290/1‑91 (MQ=255)

                                                   atatTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACa                                       >  2:779852/1‑91 (MQ=255)

                                                    tatTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAg                                      >  1:3450267/1‑91 (MQ=255)

                                                    tatTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAg                                      <  1:147823/91‑1 (MQ=255)

                                                     atTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGt                                     <  2:3233983/91‑1 (MQ=255)

                                                      ttGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGtt                                    >  1:1266414/1‑91 (MQ=255)

                                                      ggtatctccaatattttaggccacacatcaacatCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGtt                                    >  1:2300413‑M2/35‑91 (MQ=255)

                                                        ggAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTc                                  >  1:612725/1‑91 (MQ=255)

                                                        ggAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTc                                  >  2:441504/1‑91 (MQ=255)

                                                        ggAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTc                                  <  2:3769811/91‑1 (MQ=255)

                                                        ggAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTc                                  <  1:1650003/91‑1 (MQ=255)

                                                        ggAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTc                                  <  1:1712232/91‑1 (MQ=255)

                                                        ggAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTc                                  >  2:1033422/1‑91 (MQ=255)

                                                        ggAGATACCAATATCTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTc                                  >  2:459979/1‑91 (MQ=255)

                                                        ggAGACACCAATACTTTAGGCTGCAACAACATCAATTCATCTTACCTCATTCAAACACACCGGGTTATTTCATGCTCCCGTGTACAGTATc                                  >  2:1342058/1‑91 (MQ=255)

                                                         gagaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCa                                 >  1:268435/1‑91 (MQ=255)

                                                          agaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCaa                                >  1:2593645/1‑91 (MQ=255)

                                                          agaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCaa                                <  2:2390628/91‑1 (MQ=255)

                                                           gaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAat                               <  2:1659567/91‑1 (MQ=255)

                                                           gaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAat                               <  1:1213182/91‑1 (MQ=255)

                                                           gaTACCAATATTTTAAGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAat                               >  1:3365627/1‑91 (MQ=255)

                                                              tccAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATAtt                            >  2:100094/2‑91 (MQ=255)

                                                              aCCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGGGTACAGTTTCAGTAtt                            <  2:3073717/91‑1 (MQ=255)

                                                               ccAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATAttt                           >  2:2720678/1‑91 (MQ=255)

                                                               ccAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATAttt                           >  1:2028545/1‑91 (MQ=255)

                                                                 aaTATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGa                         <  2:2620340/91‑1 (MQ=255)

                                                                 aaTATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGa                         >  1:1143206/1‑91 (MQ=255)

                                                                  atatTTTAGGTTCCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGAt                        >  1:3049222/1‑91 (MQ=255)

                                                                    atTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGAttt                      <  2:1755588/91‑1 (MQ=255)

                                                                     ttttAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtc                     <  2:1450030/91‑1 (MQ=255)

                                                                       ttAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtcat                   >  2:2174030/1‑91 (MQ=255)

                                                                        tAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtcatc                  <  2:3739489/91‑1 (MQ=255)

                                                                         aGGTTGCATCAGCATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtcatca                 <  2:1365265/91‑1 (MQ=255)

                                                                         aGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtcatca                 <  2:2984803/91‑1 (MQ=255)

                                                                         aGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtcatca                 >  1:2196084/1‑91 (MQ=255)

                                                                          ggTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTcatcat                >  2:1241742/1‑91 (MQ=255)

                                                                          ggTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTcatcat                >  1:1534034/1‑91 (MQ=255)

                                                                           gTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCAtt               <  1:1534524/91‑1 (MQ=255)

                                                                              gCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTg            >  2:3778042/1‑91 (MQ=255)

                                                                              gCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCAGTTTg            <  1:3123571/91‑1 (MQ=255)

                                                                                atcaacatCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTgta          >  1:780819‑M2/9‑91 (MQ=255)

                                                                                 tcaacatCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTgtag         >  1:1210608‑M2/8‑91 (MQ=255)

                                                                                  caacatCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTgtagt        <  2:2020942‑M2/85‑1 (MQ=255)

                                                                                      atCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTAAATATTTGATTTCATCACTCTCTAGTAaga    >  2:3619914‑M2/3‑91 (MQ=255)

                                                                                        caaTTCATCTTACTTCATTAAAACACAGCGTGTTATTACATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGt  >  1:3150441/1‑91 (MQ=255)

CGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGT  >  USA300TCH1516_ALE/705290‑705468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.