| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 710532 | 237 (1.160) | 22 (0.120) | 12/142 | NT | 8.8% | intergenic (+25/+36) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH |
| ? | USA300TCH1516_ALE | = 710552 | 244 (1.350) | intergenic (+45/+16) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH | |||||
GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/710434‑710532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgagAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTATA < USA300TCH1516_ALE/710552‑710463 GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAGAAACAAAAAAGGCGAAATAATCATGATGACAAAAATA < 1:3149934/91‑1GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATA < 2:1211438/91‑1 TAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAA > 2:3123949/1‑91 TAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAA > 2:230468/1‑91 TAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAA > 1:1802223/1‑91 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA < 1:3164400/91‑1 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA < 1:3164375/91‑1 ATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAAC > 2:3306834/1‑91 ATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAAC < 1:3897182/91‑1 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC > 2:558142/1‑91 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC > 2:2042533/1‑91 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC > 2:558347/1‑91 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC > 1:2982501/1‑91 TAAAGAGGATGCCAATATTTATGTATAAAAGAGCAAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAGTCATGATGACAAAAATAAAACCG < 2:3367949/91‑1 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG < 1:2212149/91‑1 ATTTATGTATAAAATAGACAAAGAAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAG < 2:3793523/91‑1 TTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGA < 1:1917279/91‑1 ATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATT < 2:3156969/91‑1 ATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATT < 1:387659/91‑1 gGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTT < 2:704760/90‑1 TGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTT < 1:270859/91‑1 TGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTT < 1:2157699/91‑1 TGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTT < 1:196044/91‑1 GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTC < 1:793004/91‑1 GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTC < 1:793139/91‑1 TAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTC < 1:3721681/91‑1 TAAAATAGCCAAAGCAAAAAGAAAAAT‑AAAAAGGCGAAATAATCATGATGACAAAAATAAATCCGATATTCTCCATTTAAGGATTTCCTCG < 2:405890/91‑1 AAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCG < 1:428529/91‑1 AAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCG < 1:126291/91‑1 aagAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATAACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 2:3745098/88‑1 aagAGCAAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAGTCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 2:357792/88‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 1:781435/91‑1 agaaAAAGAAAAAAGAAAAAAAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTT < 2:915590/87‑1 AGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTT < 2:915676/91‑1 CCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTAT < 1:2429422/91‑1 CAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAAAAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATT < 1:1222650/91‑1 AAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTT < 2:3218212/91‑1 AAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCT > 1:1000566/1‑91 AAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCT > 1:3802974/1‑91 AAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCT > 1:3804755/1‑91 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTTCTTTGGCTAT > 2:2821921/1‑91 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTAT < 2:1282183/91‑1 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTAT > 1:1374254/1‑91 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTAT > 2:3300657/1‑91 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTAT > 2:3300616/1‑91 ACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATT > 2:217461/1‑91 ACCGAGAATCTCCATTTAAGGATTTCCTCGGATTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATT > 1:999245/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT < 2:155300/91‑1 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT < 1:71993/91‑1 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT > 2:2651007/1‑91 CGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTTTTTTTCTTTTTGCTTTGGCTATTTT > 2:350976/1‑91 CGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTT > 1:995521/1‑91 GAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTATA > 1:2371646/1‑91 GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/710434‑710532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgagAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTATA < USA300TCH1516_ALE/710552‑710463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |