BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 710532	237 (1.160)	22 (0.120)	12/142	NT	8.8%	intergenic (+25/+36)	tarA/tagH_1	N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH
*	?	USA300TCH1516_ALE	= 710552	244 (1.350)	22 (0.120)	12/142	NT	8.8%	intergenic (+45/+16)	tarA/tagH_1	N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH

Only 100 of 311 total aligned reads displayed.

GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTAAA  >  USA300TCH1516_ALE/710462‑710642

gTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAtt                                                                                            >  1:1987737/1‑91 (MQ=255)

    aaaaTAGCCAAAGCAAAAAGAAAAAAAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcg                                                                                        >  2:350976‑M2/1‑87 (MQ=255)

     aaaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcgg                                                                                       >  2:2651007‑M2/1‑86 (MQ=255)

       aTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggtt                                                                                     >  2:3300657‑M2/1‑84 (MQ=255)

         aGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggtttt                                                                                   >  1:1000566‑M2/1‑82 (MQ=255)

          gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt                                                                                  <  2:1583601/91‑1 (MQ=255)

           ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt                                                                                 >  2:2346338/1‑91 (MQ=255)

           ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt                                                                                 >  1:855677/1‑91 (MQ=255)

           ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt                                                                                 <  1:1568506/91‑1 (MQ=255)

            cAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTc                                                                                >  1:2721046/1‑91 (MQ=255)

               aggaaaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGt                                                                             <  2:2250241/88‑1 (MQ=255)

               aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACAGAGGAAATCCTTAAATGGAGATTCTAGGTTTTTTCGGt                                                                             >  2:3760077/1‑91 (MQ=255)

                gCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtt                                                                            >  1:1558429/1‑91 (MQ=255)

                gCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtt                                                                            >  2:3345020/1‑91 (MQ=255)

                  aaaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttta                                                                          <  1:737786/91‑1 (MQ=255)

                    aaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttatt                                                                        >  1:2881526/1‑91 (MQ=255)

                    aaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttatt                                                                        >  2:87945/1‑91 (MQ=255)

                     aaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattt                                                                       >  1:931032/1‑91 (MQ=255)

                      aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta                                                                      >  2:3380221/1‑91 (MQ=255)

                      aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta                                                                      >  1:1031625/1‑91 (MQ=255)

                       gAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaa                                                                     >  2:1751603/1‑91 (MQ=255)

                         aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata                                                                   <  2:3943723/91‑1 (MQ=255)

                           aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc                                                                 >  2:27644/1‑91 (MQ=255)

                            aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCTGTTTTTTTAATAACg                                                                >  2:370274/1‑91 (MQ=255)

                            aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACg                                                                >  1:690723/1‑91 (MQ=255)

                               aaaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGG‑TTTTTCGGTTTATTTAATAACGAAGc                                                            >  2:3397801/1‑91 (MQ=255)

                                aaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGc                                                            <  1:1702984/91‑1 (MQ=255)

                                 aaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCg                                                           <  2:1225521/91‑1 (MQ=255)

                                   aGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCggg                                                         >  2:1948725/1‑91 (MQ=255)

                                   aGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCggg                                                         >  1:1258922/1‑91 (MQ=255)

                                    ggCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGa                                                        <  1:1301344/91‑1 (MQ=255)

                                     gCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGAc                                                       <  2:932843/91‑1 (MQ=255)

                                       gAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTc                                                     >  1:3498997/1‑91 (MQ=255)

                                       gAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTc                                                     <  1:1404065/91‑1 (MQ=255)

                                       gAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTc                                                     >  2:2187755/1‑91 (MQ=255)

                                        aaaTAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCa                                                    >  2:876182/1‑91 (MQ=255)

                                         aataataatGATGACAAAAATAAAACCGAGGAACTCCTTCAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGAATCAt                                                   >  2:1417318/1‑91 (MQ=255)

                                         aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt                                                   >  1:1727257/1‑91 (MQ=255)

                                         aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt                                                   <  2:1498509/91‑1 (MQ=255)

                                           taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg                                                 <  1:3439764/91‑1 (MQ=255)

                                           taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg                                                 <  1:3755870/91‑1 (MQ=255)

                                           taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg                                                 <  2:3607137/91‑1 (MQ=255)

                                           taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg                                                 >  1:1616612/1‑91 (MQ=255)

                                            aatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGa                                                <  1:2494217/91‑1 (MQ=255)

                                             atCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAg                                               <  2:3870504/91‑1 (MQ=255)

                                             atCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAg                                               <  1:492939/91‑1 (MQ=255)

                                             atCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAg                                               >  1:1842116/1‑91 (MQ=255)

                                              tCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgt                                              >  1:2423744/1‑91 (MQ=255)

                                               cATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtt                                             <  2:2376228/91‑1 (MQ=255)

                                               cATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtt                                             <  2:3177485/91‑1 (MQ=255)

                                               aatgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtt                                             <  2:1278310/90‑1 (MQ=255)

                                                atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt                                            >  1:1030334/1‑91 (MQ=255)

                                                atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt                                            >  1:3353645/1‑91 (MQ=255)

                                                atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt                                            >  1:495316/1‑91 (MQ=255)

                                                 tgatgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttg                                           >  2:230403/1‑91 (MQ=255)

                                                  gatgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgt                                          <  2:2159854/91‑1 (MQ=255)

                                                     gaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGGTTc                                       >  1:3193887/1‑91 (MQ=255)

                                                      aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGTTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt                                      <  2:3244051/91‑1 (MQ=255)

                                                        aaaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaa                                    <  1:1360266/91‑1 (MQ=255)

                                                        aaaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaa                                    <  2:1647754/91‑1 (MQ=255)

                                                         aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa                                   >  2:434457/1‑91 (MQ=255)

                                                          aaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGCTGAGGGACCCATAGAGTTTGTTTCTaact                                  >  2:506271/1‑89 (MQ=255)

                                                          aaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAAt                                  >  2:1889565/1‑91 (MQ=255)

                                                             tAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCt                               <  1:2202399/91‑1 (MQ=255)

                                                                 aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt                           >  1:1678190/1‑91 (MQ=255)

                                                                 aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt                           >  1:3657505/1‑91 (MQ=255)

                                                                 aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt                           >  2:1817613/1‑91 (MQ=255)

                                                                 aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt                           >  1:2261848/1‑91 (MQ=255)

                                                                  ccGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTg                          <  2:2483738/91‑1 (MQ=255)

                                                                   cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt                         <  2:2151654/91‑1 (MQ=255)

                                                                   cGAGGAAATCCTTAAATGGAGAATatcggatttatttttgtcatcatgattatttcgcctttttatttttctttttgctttggctatttta                         <  2:405890‑M2/91‑68 (MQ=255)

                                                                     aGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTc                       <  1:2063717/91‑1 (MQ=255)

                                                                      ggAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCACCGAGTTTGTTTCTAAATTCTTTTTGTTCg                      >  2:1003622/1‑91 (MQ=255)

                                                                       gAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttatac                     <  1:793139‑M2/91‑72 (MQ=255)

                                                                       gAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCgg                     <  2:2012168/91‑1 (MQ=255)

                                                                        aaaTCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttatacc                    <  2:704760‑M2/91‑73 (MQ=255)

                                                                        aaaTCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttataca                    <  1:2157699‑M2/91‑73 (MQ=255)

                                                                         aaTCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttatacat                   <  1:387659‑M2/91‑74 (MQ=255)

                                                                         aaTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCTGCt                   >  2:2886752/1‑91 (MQ=255)

                                                                          aTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCtt                  >  2:2999015/1‑91 (MQ=255)

                                                                          aTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCtt                  <  1:2461898/91‑1 (MQ=255)

                                                                           tCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCttt                 <  1:3945043/91‑1 (MQ=255)

                                                                           tCCTTAAATGGAGACTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGCGTTTGTTTCTAAATTCTTTTTGTTCGGCttt                 >  2:2696820/1‑91 (MQ=255)

                                                                            ccTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTg                <  1:3712119/91‑1 (MQ=255)

                                                                             cTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTgg               >  2:2029200/1‑91 (MQ=255)

                                                                              ttAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGa              <  1:323154/91‑1 (MQ=255)

                                                                               tAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAt             <  1:163653/91‑1 (MQ=255)

                                                                               tAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAt             >  1:193746/1‑91 (MQ=255)

                                                                               tAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACCCAACGAGTATGTTCCTAAATTCTTTCTGTTCGGCTTTGGAt             >  1:1175229/1‑91 (MQ=255)

                                                                                aaaTGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAtt            >  2:619098/1‑91 (MQ=255)

                                                                                aaaTGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAtt            >  2:1866886/1‑91 (MQ=255)

                                                                                aaaTGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAtt            >  1:3150676/1‑91 (MQ=255)

                                                                                 aaTGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAttt           <  1:556776/91‑1 (MQ=255)

                                                                                  aTGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTc          >  2:2583172/1‑91 (MQ=255)

                                                                                   tGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCt         <  1:2183216/91‑1 (MQ=255)

                                                                                    ggAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtt        <  1:416938/91‑1 (MQ=255)

                                                                                       gaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttttt     >  1:1126773/1‑91 (MQ=255)

                                                                                         ttCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTaa   <  1:3874016/91‑1 (MQ=255)

                                                                                         ttCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTaa   <  1:514026/91‑1 (MQ=255)

                                                                                          tctcGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTaaa  >  1:1469302/1‑91 (MQ=255)

GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTAAA  >  USA300TCH1516_ALE/710462‑710642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.