| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 710532 | 237 (1.160) | 22 (0.120) | 12/142 | NT | 8.8% | intergenic (+25/+36) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH |
| ? | USA300TCH1516_ALE | = 710552 | 244 (1.350) | intergenic (+45/+16) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH | |||||
Only 100 of 346 total aligned reads displayed.
AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCG > USA300TCH1516_ALE/710442‑710622 | agagTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAgg > 2:570039/1‑91 (MQ=255) agagTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAgg > 2:1961352/1‑91 (MQ=255) agagTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAgg > 2:815183/1‑91 (MQ=255) agTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGaa > 2:433882/1‑91 (MQ=255) tATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAAt > 1:3789902/1‑91 (MQ=255) aTTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATc > 1:2065578/1‑91 (MQ=255) ttCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATcc < 2:2021033/91‑1 (MQ=255) tCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCt > 2:71114/1‑91 (MQ=255) cAATATTTATGTATAAAATAGCCAAAGCAAAAGGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTa > 2:3881287/1‑91 (MQ=255) cAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTa > 2:2520552/1‑91 (MQ=255) tatTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAAt > 1:2499480/1‑91 (MQ=255) atTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAACAATAAAACCGAGGAAATCCTTAAATg < 2:2250161/91‑1 (MQ=255) atTTATGTATAAAATAGACAAAGAAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGaatctccatttaag < 2:3793523‑M1/91‑15 (MQ=255) tttATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATgg < 1:187080/91‑1 (MQ=255) tttATGTATAAAATAGCAAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATgg < 1:1846895/91‑1 (MQ=255) ttATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGaatctccatttaagga < 1:1917279‑M1/91‑17 (MQ=255) ttATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGga > 2:3189356/1‑91 (MQ=255) aTGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGaatctccatttaaggatt < 2:3156969‑M1/91‑19 (MQ=255) aTGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGaatctccatttaaggatt < 1:387659‑M1/91‑19 (MQ=255) aTGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGgagg > 1:2830383/1‑90 (MQ=255) gTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAtt > 1:1987737/1‑91 (MQ=255) gTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAtt > 2:1254114/1‑91 (MQ=255) taAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGaatctccatttaaggatttcctc < 1:3721681‑M1/91‑24 (MQ=255) aaaaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcg > 1:995521‑M2/1‑87 (MQ=255) aagagcaaaagcaaaaagAAAAATAAAAAAGGCGAAATAGTCATGATGACAAAAATAAAACCGAGaatctccatttaaggatttcctcggt < 2:357792‑M1/88‑27 (MQ=255) aTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggtt < 2:1282183‑M2/91‑8 (MQ=255) aGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggtttt > 1:3804755‑M2/1‑82 (MQ=255) gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCAAGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt < 1:811669/91‑1 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGaatctccatttaaggatttcctcggttttat < 1:2429422‑M1/91‑32 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt < 1:2159046/91‑1 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt > 2:2350244/1‑91 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt < 2:2679731/91‑1 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt > 1:855677/1‑91 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt < 1:1568187/91‑1 (MQ=255) aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGt < 2:2500142/91‑1 (MQ=255) gCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtt > 2:3345020/1‑91 (MQ=255) gCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtt < 2:1807232/91‑1 (MQ=255) aaaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttta < 1:737786/91‑1 (MQ=255) aaaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttta < 2:2009066/91‑1 (MQ=255) aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta > 1:1031625/1‑91 (MQ=255) aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta > 2:3380221/1‑91 (MQ=255) aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata < 2:3943723/91‑1 (MQ=255) aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata > 2:2285033/1‑91 (MQ=255) aaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaataa > 1:495205/1‑91 (MQ=255) aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc > 2:27644/1‑91 (MQ=255) aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCTGTTTTTTTAATAACg > 2:370274/1‑91 (MQ=255) aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACg < 2:1854088/91‑1 (MQ=255) aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACg > 1:690723/1‑91 (MQ=255) aaaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAg < 1:1521744/91‑1 (MQ=255) aaaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGG‑TTTTTCGGTTTATTTAATAACGAAGc > 2:3397801/1‑91 (MQ=255) aaaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGG‑TTTTTCGGTTTATTTAATAACGAAGc > 2:481225/1‑91 (MQ=255) aaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTACATGGAGATACTCGGTTTTTTCGGAATAATTAATAAAGAAGc > 2:681295/1‑91 (MQ=255) aaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGc < 1:1702984/91‑1 (MQ=255) ggCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGa < 1:1301344/91‑1 (MQ=255) gCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGAc < 2:932843/91‑1 (MQ=255) gCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGAc > 2:2873561/1‑91 (MQ=255) gCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGAc > 1:1612863/1‑91 (MQ=255) cGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTTTTTTTTTTTAATAACGAAGCGGGACt > 2:1946041/1‑91 (MQ=255) gAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTc > 1:3498997/1‑91 (MQ=255) gAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTc < 1:1404065/91‑1 (MQ=255) aaaTAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCa < 2:3454593/91‑1 (MQ=255) aaaTAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCa > 2:876195/1‑91 (MQ=255) aataataatGATGACAAAAATAAAACCGAGGAACTCCTTCAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGAATCAt > 2:1417318/1‑91 (MQ=255) aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt > 1:1727257/1‑91 (MQ=255) aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt < 2:2377139/91‑1 (MQ=255) aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt < 2:1498509/91‑1 (MQ=255) ataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATc < 2:2639344/91‑1 (MQ=255) taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg < 2:3607137/91‑1 (MQ=255) taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg > 1:3250455/1‑91 (MQ=255) taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg < 1:3439511/91‑1 (MQ=255) atCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAg > 2:166920/1‑91 (MQ=255) atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt > 1:1030334/1‑91 (MQ=255) gatgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgt < 2:2159854/91‑1 (MQ=255) gaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTc < 1:2236214/91‑1 (MQ=255) aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGTTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt < 2:3243845/91‑1 (MQ=255) aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt < 1:445958/91‑1 (MQ=255) aaaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaa < 1:1360266/91‑1 (MQ=255) aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa > 1:2493233/1‑91 (MQ=255) aaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAAt > 1:545979/1‑91 (MQ=255) aaTAAAACCGAGGAAATCCTTAAATGGAGATTctcggttttttttttgtcatcatgattatttcgccttttttatttttctttttgctttg < 1:1222650‑M2/91‑60 (MQ=255) aTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTCAATTc > 2:217867/1‑91 (MQ=255) tAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCt < 1:2202399/91‑1 (MQ=255) aaaaCCGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggct > 1:1000566‑M1/1‑9 (MQ=255) aaaaCCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttttttttcttttttctttttct < 2:915590‑M2/91‑63 (MQ=255) aaCCGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctat > 2:3300657‑M1/1‑7 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatt < 1:781435‑M2/91‑66 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt < 2:3752111/91‑1 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt > 1:1678190/1‑91 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt > 1:3657505/1‑91 (MQ=255) ccGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattt < 2:155300‑M1/91‑87 (MQ=255) ccGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTg > 1:1137157/1‑91 (MQ=255) cGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatttt < 1:428529‑M2/91‑68 (MQ=255) cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt < 1:240558/91‑1 (MQ=255) cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt > 2:1625323/1‑91 (MQ=255) cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt < 2:2151654/91‑1 (MQ=255) cGAGGAAATCCTTAAATGGAGAATatcggatttatttttgtcatcatgattatttcgcctttttatttttctttttgctttggctatttta < 2:405890‑M2/91‑68 (MQ=255) gAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTTTTTTTTTTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTTTTTTTGtt > 2:3299266/1‑91 (MQ=255) aGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTc < 1:2632737/91‑1 (MQ=255) aGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTc > 1:3083232/1‑91 (MQ=255) ggAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCACCGAGTTTGTTTCTAAATTCTTTTTGTTCg > 2:1003622/1‑91 (MQ=255) | AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCG > USA300TCH1516_ALE/710442‑710622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |